Caulobacter vibrioides NA1000: CCNA_03822
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Entry
CCNA_03822 CDS
T00841
Name
(RefSeq) formamidopyrimidine-DNA glycosylase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
ccs
Caulobacter vibrioides NA1000
Pathway
ccs03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
ccs00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
CCNA_03822
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ccs03400
]
CCNA_03822
Enzymes [BR:
ccs01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
CCNA_03822
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
CCNA_03822
DNA repair and recombination proteins [BR:
ccs03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
CCNA_03822
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
zf-FPG_IleRS
IBR
Motif
Other DBs
NCBI-GeneID:
7332020
NCBI-ProteinID:
YP_002519195
UniProt:
B8GVY4
LinkDB
All DBs
Position
complement(3988188..3989051)
Genome browser
AA seq
287 aa
AA seq
DB search
MPELPEVETVRRGLEPVLSGARLSSVRANRPDLRFPLPDGFVQRLTGARILRLDRRAKYI
LAPLDRGDTLVMHLGMTGRFEIAAPEGTVRPGDFAREVTPDDKHAHVVFQTEDGATVTYF
DPRRFGFMDLIPTDRVSHHAWFAAMGPEPLGEGFDARTLEKAFANRKQGPKTLLLDQRTV
AGLGNIYVCEALHRSGISPFKPSGNIAKKRLTPLTAAIKDVLAEAVEVGGSTLKDFAAAD
GALGYFQHRFRVYDREGEPCPTPACKGVIAREVQAGRSTFFCPVCQV
NT seq
864 nt
NT seq
+upstream
nt +downstream
nt
gtgcccgaattgcccgaagtcgagaccgtccgccggggcctggagcccgtcttgtccggg
gcgcgtctttccagcgtccgcgccaaccggcccgacctgcgcttcccgctgcccgacggc
ttcgttcagcgactgaccggcgcgcggatcctgcggctggatcgccgcgccaagtacatc
ctggcgccgctcgaccggggcgacaccctggtgatgcacctgggcatgaccggccgcttc
gagatcgccgcgccggagggaacggttcgtcccggcgacttcgctcgcgaggtcacgccc
gatgacaagcatgcccatgtcgtgttccagaccgaggacggcgcgacggtcacctatttc
gacccgcgccgcttcggcttcatggacctgatcccgacagatcgcgtcagccaccatgcc
tggttcgccgccatgggccccgagccgctgggcgagggtttcgacgcccgcacgttggaa
aaggccttcgccaatcgcaagcaggggcccaagaccctgcttctggaccagcgcaccgtc
gccggactgggcaacatctatgtctgtgaggccctgcaccgatccggtatctcgcccttc
aagccgtctggaaacatcgcgaagaagcggctgactccgctcaccgccgcgatcaaggac
gttctggcggaggcggtcgaggtgggcggctcaacgctgaaggatttcgcggccgccgac
ggcgcgctgggctatttccagcaccgcttccgcgtctacgaccgcgagggcgagccgtgc
ccgacgccggcgtgcaagggcgtgatcgcccgggaggtccaggcgggacgttcaaccttc
ttctgtccggtctgtcaggtctga
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integrated database retrieval system
