Coprococcus catus: CC1_00560
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Entry
CC1_00560 CDS
T02584
Name
(GenBank) excinuclease ABC, B subunit
KO
K03702
excinuclease ABC subunit B
Organism
cct
Coprococcus catus
Pathway
cct03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
cct00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
CC1_00560
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cct03400
]
CC1_00560
DNA repair and recombination proteins [BR:
cct03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
CC1_00560
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
CC1_00560
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
UvrB
Helicase_C
ResIII
UVR
DEAD
AAA_30
AAA_22
Kinesin
TMP_2
Microtub_bd
AAA_5
SWI2_SNF2
Motif
Other DBs
NCBI-ProteinID:
CBK79034
UniProt:
D4J3W3
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All DBs
Position
51827..53818
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AA seq
663 aa
AA seq
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MDHFELVSEYAPTGDQPQAIEQLVKGFKEGNQFETLLGVTGSGKTFTMANVIAQLNKPTL
ILAHNKTLAAQLYGEMKEFFPNNAVEYFVSYYDYYQPEAYVPSSDTYIEKDSAINDEIDK
LRHSATAALSERRDVIIVSSVSCIYGLGSPIDYQEMVISLRPGMLKDRDEVIRKLIDIQY
VRNDMDFKRGTFRVRGDVVEIFPANATDTAVRVEFFGDEIDRITEFDALTGNVKARLEHV
AIFPASHYVVAPEKMEKAISAIEEELKERVEWFKHEDKLLEAQRIAERTKFDIEMMRETG
FCSGIENYSRHLSGLKPGEPPHTLLDYFPDDFLMIVDESHITIPQVRGMYAGDQSRKTTL
VDYGFRLPSAKDNRPLNFDEFESHISQMLFVSATPNVYEGEHELLRAEQVIRPTGLLDPE
ISVRPVEGQIDDLISEVNKEIEHGHKVLITTLTKRMAEDLTDYMKELGIRVRYLHSDIDT
LERSEIVRNLRLNVFDVLVGINLLREGLDIPEITLVAILDADKEGFLRSETSLIQTIGRA
ARNTEGHVIMYADRITDSMDKAITETNRRRAIQQAYNEAHGITPKTIQKAVRDLISISEA
ADKSEDNFVKDAESMSYKELNAAIRKLTKQMHSAAAELDFEKAAMLRDKIMELKKMLHEI
EED
NT seq
1992 nt
NT seq
+upstream
nt +downstream
nt
atggatcattttgaattagtatcagaatatgcaccaaccggcgaccagccccaggcgata
gagcaactggtcaaaggtttcaaggaaggcaaccagttcgagactttgctgggtgttacc
ggctccggtaagacattcaccatggcgaatgtcattgcccagttaaataagccaacgttg
atacttgcgcacaataagacgctggctgcacagctttacggagagatgaaggagtttttt
ccgaataatgcagtagaatactttgtctcctattatgattattatcagccggaggcttat
gtaccctcttcagatacttatatagagaaggattctgcgattaacgatgagattgataag
ttgcgccattctgcaacggcagcattatcagagcgcagagatgtgattattgtttcttcg
gtttcatgtatttatggtctgggcagtccgattgactatcaggagatggtgatttctctg
cgcccgggtatgttgaaagacagggatgaagtgatccgcaagctgattgacattcagtat
gtgcgcaatgacatggattttaagcgcggtactttcagagtgcgcggtgatgtggtggag
atttttccggcgaatgcaacagatacagcggttagagtagaatttttcggagatgagatt
gacagaattacggaatttgatgcattgacgggcaatgtgaaggccagactggagcatgtg
gctatttttccggcgtcacattatgtcgttgcaccggagaagatggagaaggcgatttct
gctattgaagaagaattgaaggaacgggtggaatggtttaagcatgaagataagcttctg
gaggcacagcgaattgcagagagaacgaagtttgacatagagatgatgcgtgaaaccggc
ttttgttctggtatagagaattattccaggcatttgtccggattgaagccgggagagccg
ccgcatacgcttctggattattttccggatgattttctgatgatcgtagatgagtctcat
attacaattccgcaggtgcgggggatgtatgccggtgaccagtcacgaaagacaacattg
gtagattatggtttcagactgccctctgccaaagacaatcgaccgttgaattttgatgag
tttgagtctcatatcagccagatgctttttgtatctgcgactccgaatgtttatgagggt
gagcatgaactgttaagggctgagcaggtgattcgaccaaccggattgctggatcctgag
atcagtgtacgtcctgtggaggggcagattgatgatttgatttccgaggtcaataaagag
attgagcatggccataaagtgttgatcaccacattaacgaagcgaatggctgaggatttg
acggattatatgaaagaattgggcatccgtgtccggtatctgcattcggatattgatacg
ctggagcggtcagaaattgtgagaaatcttcgattgaatgtatttgatgtacttgtggga
attaatcttttgcgagaaggtctggatattccggagattacgttggtggcgattcttgat
gcagataaggaaggatttctgcgttctgagacatcacttattcagactattggccgtgca
gcccgtaatacagaggggcatgtgattatgtatgcggacaggattacagattccatggat
aaggccattactgagacaaaccgaagacgggctattcagcaggcttataatgaagcgcat
ggcatcaccccaaagaccatacagaaggctgtcagagatctgatcagcatttctgaggcg
gcagacaagtcagaagacaattttgtcaaggatgcggagtctatgagttataaggaattg
aatgcggcaatccgcaaactgacgaaacagatgcattcggcagcggcagagcttgatttt
gagaaggcggctatgctgagagataagatcatggaacttaagaaaatgcttcatgaaata
gaagaagattga
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