Pseudocoprococcus catus: CC1_23380
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Entry
CC1_23380 CDS
T02584
Name
(GenBank) Superfamily II DNA and RNA helicases
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
cct
Pseudocoprococcus catus
Pathway
cct03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cct00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CC1_23380
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cct03019
]
CC1_23380
03009 Ribosome biogenesis [BR:
cct03009
]
CC1_23380
Enzymes [BR:
cct01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
CC1_23380
Messenger RNA biogenesis [BR:
cct03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
CC1_23380
Ribosome biogenesis [BR:
cct03009
]
Prokaryotic type
rRNA helicases
CC1_23380
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
DeaD_dimer
ResIII
CMS1
Cas3-like_C_2
AAA_19
Hyccin
Motif
Other DBs
NCBI-ProteinID:
CBK81010
UniProt:
D4J9I9
LinkDB
All DBs
Position
complement(2367511..2369091)
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AA seq
526 aa
AA seq
DB search
MEPVRFEDLGVDERILRAVTEMGFEEATPIQAKAIPEVMTGQDIIGQAQTGTGKTASFGI
PMLQKVDPKNKHVQAIVLCPTRELAIQSADEIRKLAKFMHGIKVLPIYGGQDIVKQIRSL
KTGVQVLIGTPGRVMDHMRRHTIKLDDLKIVVLDEADEMLNMGFREDIETILSQTPEERQ
TLLFSATMPQPIMEIARTYQKNAKIVKVVKRELTVANIEQYYYEVRPKNKEEVLSRLLDI
YNPALSVVFCNTKRQVDELVEGLKGRGYFAEGLHGDMKQQQRDRVMNGFRNGRTEILVAT
DVAARGIDVDDVDAVFNYDLPQDDEYYVHRIGRTGRAGKNGKAFTFITGREFYKLKDIQR
YCRTKIIAKQVPSLNDVANVKADKIFEKVAGMIDEDNLKPYIRMIEEKLEKEDYTTLDLA
AAFLRMALGDEDKSVEVDDFGDTGAEDGMVRLFINIGKNQKARPGDILGAIAGETGIAGS
LIGTIDMYDKYTFVEVPKEYARDVLNAMSHARIKGRNINIEPANRK
NT seq
1581 nt
NT seq
+upstream
nt +downstream
nt
atggaaccagtaagatttgaagatttaggtgtagatgagagaattttaagagctgtgaca
gagatgggctttgaagaggccacaccgattcaggccaaggcgattccggaagttatgaca
ggacaggatattatcggacaggcacagacaggtacaggtaagacggcatccttcggtatt
ccgatgcttcagaaggtggacccgaagaataagcatgtgcaggcaattgtcctttgcccg
acaagagagttggccattcagtcagcagatgagatccgtaaactggcgaagtttatgcat
ggtattaaagtactgccgatttatggcggacaggatattgtgaagcagatccgctctttg
aagacaggtgttcaggtgctgatcggtacgccgggacgtgtcatggaccatatgagacgc
catactattaagttggatgatctgaagattgttgttcttgatgaagcagatgaaatgctg
aatatgggattccgcgaagatattgagacaatcctttcacagacacctgaagagcgccag
acactgcttttctcagcaacaatgccgcagccaatcatggagattgcaagaacctaccag
aagaatgccaagattgtcaaggttgtaaagagggaactgacggttgccaatattgagcag
tattattatgaagtgcgtccgaagaataaggaagaagtcctttcaagacttttagatatt
tacaatccagccctttctgttgtattctgtaatacaaagagacaggttgatgaattggtg
gaaggtttaaagggcagaggttatttcgcagaaggacttcacggtgatatgaaacagcag
cagcgcgaccgtgttatgaatggtttccgcaacggccgtacagagattcttgttgcaaca
gatgtggcagccagaggtattgatgttgatgatgtggatgctgttttcaactatgatctg
ccgcaggatgatgaatattatgtgcatcgaatcggaagaacaggccgtgccggcaagaat
ggcaaagctttcacatttatcaccggccgtgagttttataagttgaaagatatccagcgt
tattgtcgtacgaagattattgcaaaacaggtcccttccttgaatgatgttgccaatgtc
aaagcggacaagatctttgagaaggtggcaggaatgatcgacgaggacaatctcaagcca
tatattcgcatgattgaggagaagcttgagaaagaagattatacaacacttgatctggca
gcagcatttctacgaatggcacttggtgatgaagataagagcgtagaagtggatgatttt
ggtgatacaggtgctgaagacggtatggtacgtctctttattaatataggtaagaatcag
aaggcaagaccgggagatattcttggtgcgattgccggtgaaactggtattgccggcagc
ctgatcggtaccattgatatgtatgacaagtatacatttgtagaagttccgaaggaatat
gcaagagacgtactgaacgcgatgtcccatgctcgtatcaaaggccgcaatattaatatt
gaacctgccaacagaaagtaa
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