Chryseobacterium cucumeris: JNG87_02145
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Entry
JNG87_02145 CDS
T10197
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
ccuc Chryseobacterium cucumeris
Pathway
ccuc03020
RNA polymerase
Brite
Enzymes [BR:
ccuc01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
JNG87_02145 (rpoC)
Transcription machinery [BR:
ccuc03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
JNG87_02145 (rpoC)
DNA repair and recombination proteins [BR:
ccuc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
JNG87_02145 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Other DBs
NCBI-ProteinID:
QRA43580
LinkDB
All DBs
Position
complement(466710..470975)
Genome browser
AA seq
1421 aa
AA seq
DB search
MSNKNKSSRFNKITIGLASPESILQDSRGEVLKPETINYRTHKPERDGLFCEKIFGPVKD
YECACGKYKRIRYKGIVCDRCGVEVTEKKVRRERIGHINLVVPIAHIWYFRSLPNKIGYL
LGIPSKKLDMIIYYERYVVIQQGIAKKLDGSDFENMEFLTEEEYLDIMETLPVENQYLDD
SDPNKFIARMGAEAVEDLLKRIDLDALSFDLRHKAHNEGSKQRRTEALKRLNVVEALRGA
NTRMINRPEWMIMRVLPVIPPELRPLVPLDGGRFATSDLNDLYRRVIIRNNRLKRLLEIK
APEVILRNEKRMLQESVDSLFDNTRKSSAVKSESNRPLKSLSDSLKGKQGRFRQNLLGKR
VDYSARSVIVVGPNLQLHECGIPKDMAAELYKPFIIRKLIERGIVKTVKSAKRIIDRKEP
VVYDILENVMKGHPVLLNRAPTLHRLGIQAFQPKMIEGKAIQLHPLVTTAFNADFDGDQM
AVHLPLGPEAILEAQLLMLGSQNILNPANGSPITVPSQDMVLGLYFMTKELSSTETMKVK
GEGLAFYSPEEAEIAYAEGRVSLNAKVRCRLPIKEDGQIVTRLIETSVGRILFNQIVPKQ
VGYINELLTKKSLRNVIGKILADTDFPTTVKFLDAMKDLGYSNAFKGGLSFSLGDIVVPV
EKKQMIAQSIETVDEIRANYNMGLITDTERYNQVIDVWTNTNAGLTEMIMSRMKTDQGGF
NSVYMMLDSGARGSKEQIRQLSGMRGLMAKPQKAGSTGAEIIENPILANFKEGLSILEYF
ISTHGARKGLADTALKTADAGYLTRRLVDVAQDVIVTEDDCGTLRGTEVTALKKNDEIVE
RISERILGRVSLHNIYDPETDELIASADQVIIESLAKRIEEAGLEAVEVRSPLTCEAKKG
ICAKCYGRNLATGKVIHMGEAVGVIAAQSIGEPGTQLTLRTFHQGGTAGNVSENPSIVAR
RDGIVEMDEVRTITSEDENGNTAEVVVSRSTEFRLVADNESRTPLMVANVPYGSILSVKP
GDKVKKGDTICRWDPYNAVIIAETSGKVEYEDIIQGISFQLEIDEQTGFEEKVISESRNK
KAVPTLKVVDSKGVEQKAYNLPVGAHLMVNDGEKIKAGKVLIKIPRKSAKAGDITGGLPR
VTELFEARNPSNPAVVTEIDGVVSYGKIKRGNRELIVEAKTGERKIYLVKLSNQILVQEN
DFVRAGSPLSDGSITPEDILRIKGPTAVQEYLVNEIQEVYRLQGVKIDDKHFEIIVRQMM
TKVSIVDGGDTQFLEGALEHKYDFLEENNRVFGLKVVVDAGDSKEFKPGQMITARELRDE
NSKLKREDLALVEVREALPATATPVLQGITRAALQTKSFMSAASFQETTKVLNEAAVAGK
IDDLNGLKENVIVGHRIPAGTGLKEYQNVIVGSKKEFEDLN
NT seq
4266 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaataaaaataaatcaagtagatttaataaaataaccatcggtttagcttcaccg
gagtctattttacaagactcaagaggggaggttttaaaaccggaaactattaactacaga
actcacaagcctgaaagagacgggctattttgtgagaaaatctttggtcctgtaaaggat
tacgaatgtgcttgtggtaaatacaagagaattcgttacaaagggatcgtttgtgaccgt
tgtggagtagaagttactgagaaaaaagtaagaagagagagaatcgggcacatcaacctt
gtagttccaattgcacacatctggtatttccgttcattaccaaacaaaatcggatacctt
ttaggaattccttctaagaaattagatatgatcatctactacgaaagatatgtggtgatc
cagcagggtattgctaaaaaattagacggttctgattttgaaaatatggaattccttaca
gaagaagagtaccttgatatcatggaaactcttcctgtagaaaaccagtatcttgatgat
tctgatccaaacaaattcatcgccagaatgggtgctgaagctgtggaagatcttttaaaa
agaatcgatcttgatgcattgtctttcgacttgagacacaaagctcacaacgaaggttca
aaacaaagaagaactgaagctcttaagagattgaacgtggtagaagcattgagaggtgct
aatacaagaatgatcaacagaccagagtggatgatcatgcgtgtgcttcctgttatcccg
ccagaactaagaccattggttccattggatggaggacgtttcgcaacttctgacctgaat
gacctttacagaagagttatcatcagaaataaccgtttgaagagattattggagatcaaa
gctcctgaagtaatcttgagaaacgagaagcgtatgcttcaggaatctgtagattcatta
ttcgataacacaagaaaatcttctgcagtaaaatctgagtcaaacagaccattgaaatca
ctttctgattcattgaaaggtaagcaaggtcgtttccgtcagaacttactagggaaaagg
gttgactactctgcgcgttcggtaattgttgtaggtccaaacttacagcttcacgaatgt
ggtattcctaaagatatggcagctgaactttacaaaccgttcatcatcagaaagctgatt
gaaagaggaattgtaaaaacagtaaaatctgcaaagagaattatcgacagaaaagaaccg
gtagtttatgatatccttgaaaacgtgatgaaaggtcaccctgttctattgaacagagca
cctacgcttcacagactgggtattcaggctttccaacctaagatgatcgaaggtaaggca
atccagctacacccgttagtaactacggccttcaacgccgatttcgatggtgaccagatg
gcggtacacttaccgttaggaccagaagcgatccttgaagctcagttattgatgttaggt
tctcaaaacatcctgaaccctgcaaacggttctccaattacagtaccatctcaggacatg
gttcttggtctttatttcatgactaaagaattaagctctacagagacgatgaaagtaaaa
ggagaaggtcttgcattctattctcctgaagaagcggaaatcgcttatgctgaaggtaga
gtatctttaaatgctaaagtaagatgtagactaccaattaaagaagacggacaaatcgta
acaagattgatcgaaacttctgtaggtagaatcctgttcaaccagattgtacctaagcag
gtaggatatatcaatgaacttctgactaagaaatcattgagaaacgttatcggtaagatc
cttgctgatacagatttccctacaactgtgaagttccttgatgcaatgaaagacttaggg
tattcaaacgcattcaaaggaggtctttctttctcacttggggatatcgtagttcctgtt
gagaaaaaacagatgattgcacaatcaattgaaactgtagacgaaattagagccaactat
aacatgggtctgattaccgatacagaacgttataaccaggtaatcgacgtttggacaaat
accaacgccggattaactgaaatgatcatgagcagaatgaaaactgaccaaggtggtttc
aactctgtatacatgatgcttgactctggagcgaggggttctaaagaacagatccgtcag
ttatcagggatgagaggtttgatggcaaaaccgcagaaagccggttctaccggagcggag
atcattgaaaacccgatccttgccaactttaaggaaggtctttcgattctagagtacttt
atctctacccacggtgcccgtaaaggtcttgcggataccgctcttaagacagccgatgcc
ggttacttaacgagaagattggtagacgttgcacaggacgttatcgttacagaagacgac
tgtggaactctaagaggtacagaagttactgcacttaagaaaaatgacgagatcgttgaa
agaatctctgaaagaatcttaggtagagtatctcttcataatatttacgatcctgaaact
gacgagcttatcgcaagtgcagatcaggtgatcattgaatctttggcgaaaagaatcgaa
gaagctggattagaagctgtggaggttcgttcaccattaacttgtgaagctaagaaaggt
atctgtgcgaaatgttacggtagaaacttggcaacaggtaaagtgattcacatgggtgaa
gcggtaggtgtaattgcagcacaatccattggggaaccaggtactcagcttacgttgaga
accttccaccaggggggtactgcaggtaacgtatcagaaaacccatctatcgttgcaaga
agagatggtatcgtagaaatggatgaagtaagaacaattacttctgaagatgaaaacggt
aatacagctgaggttgtggtttcccgttcaacagaattcagattagttgctgataatgag
tccagaactccattaatggtagctaacgtaccttacggatctatattatctgtaaaacca
ggtgataaagtgaagaaaggtgatacaatctgtagatgggatccgtataacgcggttatc
attgctgaaacttcaggtaaggtagaatacgaggatatcatccagggtatttcattccag
cttgaaattgacgaacaaacaggattcgaagagaaagtaatctctgaatccagaaataag
aaagccgtacctaccctgaaagtggtagactctaaaggagttgagcaaaaagcttacaac
ttaccggtaggagcccacttaatggttaacgatggtgaaaaaattaaggctggtaaagtc
ttaatcaagatcccaagaaaatctgcaaaagcaggggatatcaccggaggtcttccgaga
gttaccgaattattcgaagcaagaaacccttcaaacccagcggttgttactgaaatcgac
ggggtagtttcttacggaaaaatcaagagaggtaaccgtgaacttattgttgaggctaaa
accggagaaagaaaaatttacttagtaaaactttctaaccagattcttgttcaggagaat
gacttcgtaagagcaggttctccactttctgacggttctatcacaccggaagatatcttg
agaattaaaggtccaacagccgttcaggaatacttagtaaacgaaattcaggaagtttac
cgtctacagggggtaaaaatcgatgataagcacttcgaaattatcgtaagacaaatgatg
acgaaagtatctatcgtagatggaggtgatactcaattccttgaaggagctcttgaacat
aagtatgacttcctggaagaaaacaacagagtattcggtcttaaagtagtagtagatgct
ggtgattctaaagaattcaagccaggtcagatgattactgcaagagaattaagagacgaa
aactctaagttgaagcgtgaagatttagcattggtagaagtaagagaagctcttcctgct
acggcaactccggtactgcaaggtattacaagagcagcccttcagactaagtcattcatg
tcggcagcatcattccaggaaacaactaaagttcttaacgaagcagcagttgctggtaag
atagacgatcttaacggtcttaaagaaaatgtaattgtaggacacagaatccctgcaggt
acaggtcttaaagagtatcagaacgttattgtaggttctaagaaagaattcgaagacctt
aactaa
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