Chryseobacterium cucumeris: JNG87_02390
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Entry
JNG87_02390 CDS
T10197
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
ccuc Chryseobacterium cucumeris
Brite
KEGG Orthology (KO) [BR:
ccuc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
ccuc03009
]
JNG87_02390 (rlmD)
Enzymes [BR:
ccuc01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
JNG87_02390 (rlmD)
Ribosome biogenesis [BR:
ccuc03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
JNG87_02390 (rlmD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
Methyltransf_31
TRAM
Methyltransf_25
Cons_hypoth95
N6_N4_Mtase
TRM5-TYW2_MTfase
Methyltransf_15
MTS
Methyltransf_11
Methyltransf_4
RrnaAD
PCMT
NpmA
PrmA
Motif
Other DBs
NCBI-ProteinID:
QRA43619
LinkDB
All DBs
Position
complement(518621..520033)
Genome browser
AA seq
470 aa
AA seq
DB search
MSRKKKRDLTLENIKLLTAGAKGVAIGKTEEGKTVMVTGAIPGDIVNVRVKKAKSKYYEG
EAIEVLEKSPYRVEPKCIHFGTCGGCKWQNMSYEKQLDFKQEEVYNNIKRIGGIDDFETV
PILGSEEQYFYRNKMEFSFSNARWLTQYEISSEENFGSKDALGFHIPGMWSKILDLKECF
LQEDPSNAIRLAVKEYGVNTGLDFFDVRNQEGFLRTLMMRQNSKGEWMVLFQLYREEKEN
REKLFEFLLGKFPQIKTLVYAINPKQNDSIYDLNINVYFGEGYLMEEMDGLQFKIGPKSF
FQTNYKQALELYRKTLEFADLKGDEVVYDLYTGTGTIAQYVARKAKQVIGIESVQEAIDA
AIEHAALNGLTNTTFYCGDMKDIFNDEFMASHPKADVLITDPPRDGMHQKVVEQILKLSP
EKVVYVSCNSATQARDLALMKDHYTLVKILPVDMFPQTHHVENIALLVKK
NT seq
1413 nt
NT seq
+upstream
nt +downstream
nt
atgagtaggaagaaaaaaagagatctaactcttgaaaatataaaattgttgacagccgga
gcaaaaggcgtggcaataggaaaaacagaggaaggtaaaacggtaatggtaacaggcgcc
attccaggtgatattgtgaatgtgagagtgaaaaaagcaaagtctaaatactatgaaggc
gaagccattgaagttcttgaaaaatcaccgtacagagttgagcctaaatgtattcatttt
ggtacttgcggaggatgcaagtggcagaatatgagctatgaaaaacagcttgattttaaa
caggaagaagtctataataatatcaaaaggatcggaggaattgatgactttgaaacggtt
ccgattctaggatctgaagaacaatatttttacagaaataaaatggagttttccttctct
aatgcgagatggcttactcaatatgaaatcagctccgaagaaaatttcggaagcaaagat
gccttaggttttcatattccgggaatgtggagcaagattcttgatttgaaagagtgtttc
cttcaggaagatccttccaatgctattagactggctgtaaaagaatatggcgttaatact
ggccttgacttttttgatgtgagaaatcaggaaggttttttaagaaccttaatgatgaga
cagaactccaaaggagagtggatggttcttttccagctttacagagaagaaaaagaaaac
agagaaaagctttttgaattcttattaggcaaattcccgcagattaaaacattggtgtat
gctattaatcctaagcagaatgactctatttatgatttaaatatcaatgtatatttcggg
gaaggttaccttatggaagaaatggacggattgcagtttaagatcggcccgaaatcattc
tttcagaccaactacaaacaagcgctggagctatacagaaaaacattggagtttgcagat
cttaaaggagatgaagtagtgtatgacctttatacaggaacaggaacaatcgcccagtat
gtagcaagaaaggcaaaacaggtgatcggaatagaatctgtacaggaagccatagacgca
gcaatagaacacgccgcgttgaacggattgacaaacacaacgttctattgtggagatatg
aaagatattttcaatgatgaatttatggccagccaccctaaagcagatgtgctaatcacg
gatcctccaagagatggaatgcatcagaaggttgtagagcagattttaaaactttcacct
gaaaaagtagtttatgtaagctgtaactcagcaacacaggctagagatcttgcactgatg
aaagatcattatactttagtaaagatcttaccggtagatatgttcccgcaaacgcaccat
gttgagaacattgcattgcttgttaaaaaataa
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