Chryseobacterium cucumeris: JNG87_08000
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Entry
JNG87_08000 CDS
T10197
Symbol
polA
Name
(GenBank) DNA polymerase I
KO
K02335
DNA polymerase I [EC:
2.7.7.7
]
Organism
ccuc Chryseobacterium cucumeris
Pathway
ccuc03030
DNA replication
ccuc03410
Base excision repair
ccuc03420
Nucleotide excision repair
ccuc03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
ccuc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
JNG87_08000 (polA)
03410 Base excision repair
JNG87_08000 (polA)
03420 Nucleotide excision repair
JNG87_08000 (polA)
03440 Homologous recombination
JNG87_08000 (polA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ccuc03032
]
JNG87_08000 (polA)
03400 DNA repair and recombination proteins [BR:
ccuc03400
]
JNG87_08000 (polA)
Enzymes [BR:
ccuc01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
JNG87_08000 (polA)
DNA replication proteins [BR:
ccuc03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
JNG87_08000 (polA)
DNA repair and recombination proteins [BR:
ccuc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA polymerase I
JNG87_08000 (polA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
JNG87_08000 (polA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A
5_3_exonuc_N
DNA_pol_A_exo1
5_3_exonuc
DNA_polI_exo1
HHH_5
HHH_2
DUF2202
ACS_CODH_B_C
DUF1198
Motif
Other DBs
NCBI-ProteinID:
QRA44685
LinkDB
All DBs
Position
complement(1795947..1798781)
Genome browser
AA seq
944 aa
AA seq
DB search
MDATQDKRLFLIDAYAMIFRGYYALIRNPRLTSKGLDTSAIFGFTNSLIELIRREKPTHL
AVVFDVGQASVRTDDFSEYKANRSETPEAIKIAIPYIHKILEAMHIPILGVEGYEADDVI
GTIACKAEKEGYTTFMVTPDKDFAQLVTDKIKIYKPGLKGGDIEILGVEEVKAKYEIDDP
KQVIDFLAMMGDAVDNIPGLEGVGEKTAMKFLKEFGSIENLLANTDKLKGKLKEKVEASA
ERGIMSKKLATIICDAPVEFHQEQYDLETPDFEKVKEVFDEIEFRRLYENLYRAFAPAAV
ETVVVSEVEVKQTPAGTEVKGQVMQLDLFANFEELDQATSTKSTIENNDHLYQFINNPKA
QKKLVDNLLQQKVVCFDTETTSLNELEAELVGMSFSYKKGLAYYIPFSENKEEVLQTLEI
FRPFFEKEDLLKVAHNLKFDYKVLKQYDITVKGAMFDTMIAHYLLNPDGRHGMDYLSEVY
LNYKPVSIETIIGKKGKKQGNFRDADLRTQTDYAAEDADVTFQLYELFAPQLKKENLEEL
FFNIEMPLMEVLAKMELSGISLDEKWLAQESVDLENDLKQLETKIFELSGEEFNMNSPKQ
LGEILFEKLQLDPKAKKTKTGQYATSEDVLQKLSSKHEIIKHILEYRTYQKLKSTYVDAL
PSQIEKKDNRVHTNFSQTTAATGRLASVNPNLQNIPIRTVRGQQIRGAFVSGEGKKIISA
DYSQIELRLIAEISGEDNMIKAFQDGEDIHASTAAKLFKIHLAEVSKTQRSQAKTVNFGI
IYGQGAFALAEQTGLSRTEAKQMIEAYFETYPKLKEYMAEQVNKARQVGYVETILGRKRH
LKDINSNNFVVRGHAERNAVNAPVQGSAADVVKLAMIKIDRELEEQQLKTKMLLQVHDEL
VFESPVDEIDTASKLIKTEMESALKTQVPLLVEIGVGDNWLEAH
NT seq
2835 nt
NT seq
+upstream
nt +downstream
nt
atggacgcaacacaagataaaaggctgtttctcatcgatgcttatgcgatgattttcaga
ggatattacgcattaatcaggaatccgagactcaccagcaaaggtctggatacttctgcc
atcttcggttttaccaattctctcatcgaattgatcagaagagaaaaaccaacacacctg
gcagtagtttttgatgttggacaggccagtgtaagaactgatgatttctcagaatataaa
gccaacagaagcgaaactcccgaagcaatcaaaattgcgattccatatatccacaaaatt
ctggaagcaatgcatatcccgattcttggggtagaaggatatgaagccgatgatgtcatt
gggactattgcatgcaaagccgaaaaagaaggatacaccaccttcatggtgacaccggat
aaagattttgcacagctggttacggataaaattaaaatttataagccaggtttaaaaggc
ggtgacattgaaattttaggagtagaagaagtaaaggcaaaatatgagattgatgatcct
aagcaggtgattgatttccttgccatgatgggagatgcagtagataatattcctggattg
gaaggagtaggagagaaaactgctatgaaattcctgaaagaattcggcagcattgaaaat
ttattagccaatacggataaactgaaaggaaaactgaaagaaaaagtagaagcttccgca
gaacgtggtattatgtctaaaaaattagccactatcatctgtgatgctcctgtagaattc
catcaggaacaatacgacctggaaactccggattttgaaaaagtaaaagaggtctttgac
gaaatagaattcagaagactatacgaaaacctttacagggctttcgctcctgcagctgta
gaaacagtggttgtaagtgaagtagaagtaaaacagactccggccggaaccgaagtaaaa
ggacaggttatgcagcttgatctttttgccaattttgaggaactggatcaggcaacttct
acaaagtctacgattgagaataatgatcatctgtatcagtttatcaataacccgaaagca
cagaaaaaactggttgacaatctgctgcagcagaaagtggtatgtttcgatacggaaacg
acatcattaaacgagcttgaagcagaactggtaggaatgagcttctcttataaaaaagga
cttgcttactatattccgttctctgaaaacaaggaagaagtgttgcagaccctggagatt
ttcagaccgtttttcgaaaaagaagacctgctgaaagtagcgcacaaccttaaatttgat
tacaaagttttaaaacaatacgacatcaccgtgaaaggcgccatgtttgataccatgatt
gcccactacctcctgaacccggacggaagacacgggatggattatctctcagaagtatat
ctgaactataaaccggtatccattgaaaccattatcggaaaaaaagggaaaaaacagggg
aatttcagagatgctgatctgagaacacaaacagattatgcagcagaagatgcagatgta
actttccagttgtatgagctattcgcaccacagctgaaaaaggagaacctggaagagctt
ttctttaacattgaaatgcctctgatggaagtacttgcaaaaatggaactttcagggatt
tctttggatgaaaaatggttggcacaggaaagtgttgaccttgagaatgatctgaaacag
cttgaaacaaagatttttgaactttcaggagaagaattcaatatgaattcaccgaagcag
ctgggagagattctgtttgaaaaattacagctcgatccaaaagcgaagaaaacaaaaaca
gggcaatatgcaacatcagaagatgtgcttcaaaaattaagttcaaaacatgaaattatc
aagcatatcctggaatacagaacctatcagaaattaaaatcaacttatgtggatgcattg
ccttcacagattgagaaaaaagataacagagtacataccaacttctcacagactacagct
gctacaggccgtttggcgagtgtaaaccctaacctgcagaatattccgatccgaacggtg
agagggcagcagatccgtggagcatttgtttccggagaaggaaagaagattatttctgcc
gattattcacagattgaacttcgtttgattgctgagatttccggagaggataatatgatc
aaagcttttcaggatggagaagatatccacgcttctaccgccgcaaaactctttaaaatt
catttggctgaggtatccaaaactcagagaagtcaggctaaaaccgtaaactttggaatt
atctatggacaaggagcttttgctttggcagaacaaaccggattatcccgtacagaagcc
aaacagatgatcgaagcttactttgaaacctatccgaaactgaaggagtacatggctgag
caggtgaacaaagcacgccaggtaggatatgttgaaactattttaggaagaaaacgtcat
ttgaaagatattaattccaataattttgtggtaagaggtcatgcggaaagaaatgctgta
aacgcaccagttcagggaagtgcagcagatgttgtaaagcttgccatgattaaaatagac
agagaacttgaagagcaacagcttaaaacaaagatgctgcttcaggtacatgacgaattg
gtgttcgaatctccggtagatgagattgatacagcctcaaaactaatcaaaactgaaatg
gaaagtgccttaaaaacacaggttccgctattggtagaaattggagtaggagataactgg
ttagaagcacattaa
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