Chryseobacterium cucumeris: JNG87_10960
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Entry
JNG87_10960 CDS
T10197
Symbol
dacB
Name
(GenBank) D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase
KO
K07259
serine-type D-Ala-D-Ala carboxypeptidase/endopeptidase (penicillin-binding protein 4) [EC:
3.4.16.4
3.4.21.-]
Organism
ccuc Chryseobacterium cucumeris
Pathway
ccuc00550
Peptidoglycan biosynthesis
ccuc01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
ccuc00001
]
09100 Metabolism
09107 Glycan biosynthesis and metabolism
00550 Peptidoglycan biosynthesis
JNG87_10960 (dacB)
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
ccuc01002
]
JNG87_10960 (dacB)
01011 Peptidoglycan biosynthesis and degradation proteins [BR:
ccuc01011
]
JNG87_10960 (dacB)
Enzymes [BR:
ccuc01000
]
3. Hydrolases
3.4 Acting on peptide bonds (peptidases)
3.4.16 Serine-type carboxypeptidases
3.4.16.4 serine-type D-Ala-D-Ala carboxypeptidase
JNG87_10960 (dacB)
Peptidases and inhibitors [BR:
ccuc01002
]
Serine peptidases
Family S13: D-Ala-D-Ala peptidase C family
JNG87_10960 (dacB)
Peptidoglycan biosynthesis and degradation proteins [BR:
ccuc01011
]
Peptidoglycan biosynthesis and degradation
DD-Carboxypeptidase/DD-Endopeptidase (Low molecular weight PBP)
JNG87_10960 (dacB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Peptidase_S13
Beta-lactamase2
Peptidase_S11
MctB
Motif
Other DBs
NCBI-ProteinID:
QRA41162
LinkDB
All DBs
Position
complement(2416913..2418382)
Genome browser
AA seq
489 aa
AA seq
DB search
MVNFRKYISSAAVLASGLFLAQSTVSTVLYSQNYDNQKSSLNLPSPVSTIVEKTVLSAKE
LVDINVNTMMADPVLKNATWGFVVYDPKTKKVISSYNENTPLVPASTTKLLTTETALNML
GENYRWMTQLEYSGTIDENGVLNGNLYVIGSGDPSLGTNKAGAASYRDIISDFVGGVSRE
GIKKVNGDIIIQTALFKGNISVLPENVVWLENNNYYLPAGSTRDINPANEKLIVKKGGFS
TEKKFFYVSPYNHQMVYADKYEGNGVLTTKLPDAPAYLANSFRTTLMKSGIPVTGKVTPK
MTDAAPENRKMLSAYKSPTLSDIIYYTNQHSDNSLAEALLRTVGYQKMGDQTSESGRIVV
TNHLKDAGFDMVGLNYIDGSGLSRSNNVTPISQVKFLTSLMDQKYYRSYLTSLPIGGQSG
TLKRMFNAGGNGQVFAKTGTLNKVKTLAGYLKTNSGKTLVFSLMVNNYSGSVDMVKKRME
KILEPALDL
NT seq
1470 nt
NT seq
+upstream
nt +downstream
nt
atggtaaatttcagaaaatatatttcaagtgcggcggtgttggcttctggtcttttcctg
gctcaatctaccgtttctaccgttctttattcccagaattatgacaatcagaaaagcagt
ttaaacctgccttcacccgttagtacgatagtggagaaaactgttttgtcagcaaaagaa
ctggtggacattaatgtaaacacaatgatggcggatcctgtgctgaaaaatgcaacctgg
ggattcgtagtgtatgacccgaaaacgaagaaggttatctcttcgtacaacgaaaatact
cctttagtacctgcttctacgaccaaattgttgacaacggaaacggctttaaatatgctg
ggtgaaaactaccgttggatgactcagctggagtactcaggaactatagatgaaaacgga
gtgttgaatggaaatctttatgtaataggaagcggagacccttctttgggaacaaacaaa
gcaggtgcagcatcttatagagatattatttcagatttcgtaggcggtgtttcaagagag
ggaatcaaaaaggtaaatggtgatattatcattcagacagcgcttttcaaaggcaatatt
tcagtgcttccggaaaatgttgtatggttggaaaacaataactattatttacctgcagga
agtacccgcgatatcaacccggccaacgaaaaactgatcgttaaaaaaggtggtttctct
acagaaaagaaatttttctacgtttctccttacaatcatcagatggtatatgctgataaa
tacgaaggaaacggagttttaacaaccaaacttcctgatgcaccggcttaccttgccaac
tctttcagaacaacactgatgaaaagcggaattcctgttaccggaaaagtaactccgaaa
atgacagatgcagcccctgaaaacagaaaaatgctttcagcatataaatcacctacttta
agtgatattatttattataccaaccagcacagtgataattcactggcagaagctttgtta
agaacggtaggatatcagaaaatgggcgaccagacttcagaatccggaagaatcgtggtg
actaatcacctgaaagatgcaggttttgatatggttggacttaattacattgatgggagc
gggctttcaagaagtaataatgtaaccccgatttctcaggtgaaatttcttacttctctg
atggatcagaaatactacagatcttatctgacttctctgcccatcggagggcaatccgga
acattgaaaagaatgttcaatgcaggagggaacggacaggtttttgcgaaaacaggaact
ttgaataaagtaaaaacattagccggttatctgaaaaccaattcaggaaaaacgttggtt
ttttctttaatggtgaataactattccggatcagtagatatggtaaagaagagaatggaa
aaaattcttgaacccgcactggatctttaa
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