Chryseobacterium cucumeris: JNG87_16830
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Entry
JNG87_16830 CDS
T10197
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
ccuc Chryseobacterium cucumeris
Pathway
ccuc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ccuc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
JNG87_16830
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ccuc03019
]
JNG87_16830
Enzymes [BR:
ccuc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
JNG87_16830
Messenger RNA biogenesis [BR:
ccuc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
JNG87_16830
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
ERCC3_RAD25_C
P-loop_SecA
UvrD-helicase
Cas3-like_C_2
HEM4
CheB_methylest
Motif
Other DBs
NCBI-ProteinID:
QRA42274
LinkDB
All DBs
Position
3761713..3763017
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AA seq
434 aa
AA seq
DB search
MNFTDLNLIEPIAKAIQEQGYTTPTPIQERSIPDILEGRDFLGCAQTGTGKTAAFSIPIL
QNLSKNKIPNKHIKALILTPTRELAIQIEENINAYGKYLPLKQLVIFGGVKQGNQEAALR
KGVDILVATPGRLLDFIAQGIISLKNLEIFVLDEADRMLDMGFVHDVKRVIKLLPQKRQT
LFFSATMPAEIQKLANSILNNPVKVEVTPVSSTADTIKQSVYFVEKDNKLNLLSHILQND
ISDSVLVFARTKHGADKISRKLQKDNISAEAIHGNKSQNARQNALNNFKSGKTRVLVATD
IAARGIDIDELKFVINFELSDVSETYVHRIGRTGRAGAEGTSISFVDGLDLLNLKNTEKL
IGKKIPVIKDHPFHTDDLVAQKRDSNNKPVPAGGGKPKTENSNNSRSNNNRKKPSAGASV
GFKKPKNKNFTRKK
NT seq
1305 nt
NT seq
+upstream
nt +downstream
nt
ttgaattttacagacttaaacttaatagaacctattgcaaaagcaatccaggagcagggc
tacacgactccgactcctatccaggaaagatctattcctgatattttagaaggcagagac
tttttaggttgtgcgcagacaggaacaggaaaaacagccgctttttccatccctatccta
cagaatttatccaaaaataaaattcccaataaacatataaaagccttaatccttaccccc
accagagaactggccattcagattgaggaaaacattaatgcttacggtaaatatcttccg
ttaaaacaacttgttattttcggaggcgtaaaacaaggaaatcaggaagctgctttgaga
aaaggggttgatattctggtagcaacaccaggaagacttctggactttattgctcaggga
atcatcagcctgaaaaaccttgaaatttttgttcttgatgaagcagacagaatgctggat
atgggatttgtacatgatgtaaaaagagttattaaacttttacctcagaagagacagact
ttattcttttcggcaacaatgccggctgaaattcagaaactggctaattctatcctgaat
aatcctgtgaaagtggaggtaactccggtttcttctacagcagataccatcaaacaatct
gtatattttgtagaaaaagataacaaactgaatttgctttctcacattcttcaaaatgat
atttcagattctgtactggtttttgccagaacgaagcatggcgcggataagatttcaaga
aaacttcagaaagataatatctctgcagaagcgattcacggtaacaaatctcagaatgca
cgacaaaatgcgttgaacaatttcaaatccggaaaaacaagggttcttgtggcgacagat
attgcagccagaggaattgatattgatgaattgaagttcgtaatcaattttgaactgtct
gatgtttctgaaacctatgtacacagaatcggaagaacaggaagagccggagctgaagga
acctctatttcttttgtagacggacttgatcttctgaatttaaagaatacagaaaagctg
atcggcaaaaaaattcctgtgatcaaggatcatccgttccatacagatgatctggtggca
cagaagagggattcgaataataaacctgttcctgccggcggcggaaagcccaaaacagaa
aacagtaataattcaaggtctaataataaccgtaaaaagccttctgcgggagcttctgta
ggttttaaaaaacctaagaataagaatttcacaagaaaaaaataa
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