Chryseobacterium cucumeris: JNG87_16865
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Entry
JNG87_16865 CDS
T10197
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
ccuc Chryseobacterium cucumeris
Pathway
ccuc03018
RNA degradation
Brite
Enzymes [BR:
ccuc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
JNG87_16865
Messenger RNA biogenesis [BR:
ccuc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
JNG87_16865
Ribosome biogenesis [BR:
ccuc03009
]
Prokaryotic type
rRNA helicases
JNG87_16865
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Ortholog
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Gene cluster
GFIT
Other DBs
NCBI-ProteinID:
QRA42281
LinkDB
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Position
complement(3768574..3770271)
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AA seq
565 aa
AA seq
DB search
MNLFTETNLSPDILKAIGELGYESPTEIQKQTIPFILSDIRDLIALAQTGTGKTAAFSLP
ILDMIDDTSRKIQLLVLCPTRELCLQISKDIKNYSKYMKDIKTTAVYGGSSIVEQMRSLK
DKPQIIVGTPGRVIDLINRKALDFSAIHWLVLDEADEMLSMGFKDELETILSETPETKQT
FLFSATMNKEVERISKNYLTKPHRISVGSINEVKKNITHEYYVVGYRQKKEALKRLIDAN
PNQYSIIFCRTRMETQEVADFLMQNGYAADALHGDLSQAQRDTVMKKFRLKNIDILVATD
VAARGLDVNSLTHVIHFSLPDDPEVFVHRSGRTGRAGKDGISMALIKPEESRKLKQIKSA
TKIEIHERFIPTGDDIIKAQVGGVFEKLLTEHEDLFEFDDSLIPDLSNFTKEELVHQLLQ
FQLKDLALYYKDKHDLAEQKLSSRDDDYSRRDRGRDRDRDRGRDRDRGRDRDRDRGGKPR
RRDENMVRFFFNLGKKDHLKKLDVLDIINKATAGGKSKKRAEIGDIEILEKFSFFEVEKS
FKDNVLSNIQSMKFKGKDMRAEVAN
NT seq
1698 nt
NT seq
+upstream
nt +downstream
nt
atgaatttatttacggaaaccaatttaagtcctgatatccttaaggcaattggcgaactg
ggttacgaaagcccaacagaaatccaaaaacagactatcccttttattctttcagatatt
cgcgacttgatcgcacttgcgcagacagggacaggcaaaacagcagcgttttcgcttccg
attttggatatgattgacgatacgagtcgcaaaatccaattattggtgctttgtccgaca
cgggaattatgtcttcagatttcgaaggacataaagaattactctaagtatatgaaagac
atcaagacaactgcggtttatggtggaagtagtattgtagagcagatgagatctttgaag
gataagccacagattatcgtgggaactccgggaagagtaattgatcttatcaacagaaaa
gcattagatttttctgcgatccattggttagtattagacgaagctgatgaaatgctttct
atgggattcaaggacgaattggaaaccattctaagcgaaaccccggaaacgaaacaaact
ttcttattctctgcaacgatgaataaagaggtggaaagaatttccaaaaattatcttaca
aaaccacatcgtatttcagtaggttctatcaacgaagtgaagaagaacattactcacgaa
tactatgttgtagggtaccgtcagaaaaaagaagcattgaagagacttatcgatgcaaat
ccaaaccagtattccattatcttctgcagaacgagaatggaaactcaggaggttgctgat
ttcttaatgcagaacggatatgccgctgatgctcttcacggtgatctttctcaggcgcag
agagatacggtaatgaagaaattcagattgaaaaacattgatattcttgtggctacagac
gttgccgcaagaggactggatgtaaactctcttactcacgttattcacttctctttaccg
gatgaccctgaagtattcgttcacagaagcggaagaacaggtagagctggaaaagacggt
atttctatggctctaatcaagccagaagaaagcagaaaactgaaacagatcaaatctgca
actaaaattgaaatccacgaaagatttatccctacaggtgatgatattatcaaagctcag
gtaggaggtgtatttgaaaaattattgacagagcacgaagatcttttcgaatttgatgat
agcttaatcccggatctgagcaacttcacaaaagaagaactggtgcaccagctgctacag
ttccagttgaaagatcttgctttatactacaaagacaagcacgaccttgctgagcagaaa
ttaagcagcagggatgacgattactcaagaagagaccgtggacgtgacagagacagagat
agaggtcgcgacagagatcgcggacgtgacagagacagagatcgtggcggaaaaccaaga
agaagagatgaaaacatggtaagattcttcttcaaccttggtaaaaaagaccatttgaag
aagcttgatgttttagatattatcaacaaagctactgctggcggaaaaagcaagaaaaga
gcggaaatcggtgatatcgaaatcttagagaaattctctttcttcgaagttgaaaaatcg
ttcaaagacaatgtattgagcaatattcaatcgatgaagttcaaaggaaaagatatgaga
gctgaagtagctaactaa
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