Chryseobacterium cucumeris: JNG87_17765
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Entry
JNG87_17765 CDS
T10197
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
ccuc Chryseobacterium cucumeris
Brite
KEGG Orthology (KO) [BR:
ccuc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
ccuc03016
]
JNG87_17765
Enzymes [BR:
ccuc01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
JNG87_17765
Transfer RNA biogenesis [BR:
ccuc03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
JNG87_17765
Prokaryotic type
tRNA splicing ligases
JNG87_17765
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
QRA42451
LinkDB
All DBs
Position
complement(3973259..3974650)
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AA seq
463 aa
AA seq
DB search
MGNLKLKGKDILKLGYPNNQSINVALEVMKRNFATKNIHHVKSLLKEILLNPEEFEKDLT
FGQIAETLLSSKKTEKRMLNSQRASFQIFGTNISEEAKNQLYTALKLPISTQGALMPDAH
SGYGLPIGGVLAVENAVIPYGVGMDIGCRMSLSILDTPVSYLEGARDKYEKALAEHTKFG
MYETHKSHIDHEIFDRDTFDMIPILRRLKGKAIKQMGSSGGGNHFVEFGEVEITEEDEQI
GLPKGKYLGILSHSGSRGLGAEIAQYYSRVATEQCPLPKEAQNFAWLDLSTHLGLEYWTA
MNLAGDYASACHDDIHRRLVKAVGGRVKARIENHHNFAWKEIHNGKEVIVHRKGATPANE
NELGMIPGSMTAKGFIVRGKGNPESLNSASHGAGRAHSRGECRSLFTQHDIKKELKLKNV
TLMGGNAEEAPMAYKDINEVMNAQSELVDILGTFQPRIVRMDR
NT seq
1392 nt
NT seq
+upstream
nt +downstream
nt
atgggaaatttaaaactaaaaggaaaagatatattaaaactgggctatccaaataatcaa
agcataaacgtagcattggaagtcatgaaaagaaattttgcaacgaagaatattcaccac
gtaaaatctcttttaaaggaaatcctgctgaacccggaagaatttgaaaaagatctcacc
ttcggacagattgcagaaaccctgctttcatccaaaaaaactgaaaagcggatgctgaat
tcccagcgggcttcatttcagatttttggtactaacatttcagaggaggcaaaaaatcag
ctatacactgccttgaagctgccaatttcaactcagggagcattaatgccagatgcccac
agtggttacggccttcctatcggtggagttctggcggtggaaaatgcagtaatcccttat
ggagtaggaatggatattggctgcagaatgagcctcagtattctggatacgcccgtttca
tatcttgaaggagcgagagataagtatgaaaaagcgcttgctgaacatacaaagttcgga
atgtatgagacccataaatctcacatagaccacgagattttcgacagagatacattcgat
atgatcccgatcttaagaagattaaagggtaaagccatcaaacagatgggatcctcaggc
gggggaaatcattttgtagaattcggggaagtggaaatcaccgaagaagatgaacagatt
ggcctgcctaaaggaaaatatctgggaatactttctcacagcggttcaagaggtcttgga
gctgagatagcccagtattactcaagagtggcaacagaacagtgtccattaccaaaagaa
gcacaaaacttcgcatggctggacctcagtacacacctgggactggaatactggacggca
atgaaccttgccggagattatgcttcagcctgccacgacgatattcacagaaggctggta
aaagcggtcggtggaagagtaaaagccagaattgaaaaccatcacaacttcgcgtggaaa
gaaatccataacggaaaagaagtgattgttcaccggaaaggagccactcctgccaatgag
aatgaattgggaatgattcccggatccatgacggcgaaaggatttatcgttcgcggaaaa
ggaaacccggaatccctgaactctgcatctcatggagccggaagagcgcactcaagaggg
gaatgcagaagccttttcacccagcatgatatcaaaaaagaactgaagctgaaaaatgtc
acactgatgggtggaaatgcagaggaagcaccaatggcctacaaagacatcaatgaagtg
atgaatgcacaaagtgagctggtagacatcctgggaacattccagccacgaattgtgaga
atggacaggtaa
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