Chryseobacterium cucumeris: JNG87_20085
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Entry
JNG87_20085 CDS
T10197
Symbol
uvrA
Name
(GenBank) excinuclease ABC subunit UvrA
KO
K03701
excinuclease ABC subunit A
Organism
ccuc Chryseobacterium cucumeris
Pathway
ccuc03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ccuc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
JNG87_20085 (uvrA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ccuc03400
]
JNG87_20085 (uvrA)
DNA repair and recombination proteins [BR:
ccuc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
JNG87_20085 (uvrA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
JNG87_20085 (uvrA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrA_inter
ABC_tran
SMC_N
UvrA_DNA-bind
nSTAND1
AAA_29
AAA_16
RsgA_GTPase
DnaJ_CXXCXGXG
AAA_21
nSTAND3
AAA_25
ATPase_2
Motif
Other DBs
NCBI-ProteinID:
QRA42889
LinkDB
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Position
complement(4493341..4496172)
Genome browser
AA seq
943 aa
AA seq
DB search
MSKSTEYIEVYGAREHNLKNINVKIPRNELVVITGLSGSGKSSLAFDTIFAEGQRRYIET
FSAYARQFLGGLERPDVDKIEGLSPVIAIEQKTTNKNPRSTVGTVTELYDFLRLLYARVS
DAYSLSTGQKLVSYTEDQILETIKENYKKEKIMLLAPVVRSRKGHYHELFVQMAKKGYGQ
ARIDGELQDIEYDLKLDRYKTHDIDIVIDRWIIGENASESRMEKSLRTAMEMGEGIIGIQ
KLGSTDIEYFSKNLMDAETGHSLALPEPNTFSFNSPKGSCPNCKGLGTIKKINTDYFIDN
PKLSINQGGLLPLEDIKSNKWILSQIKNILEIFGLGLTTPLQDIPEEALDYIYNGCHKEF
NKDLKYAGITKKIKIGFDGLIAFMEEIIDDRDSYEAVLLERHFTTEEICPECHGTRLQPS
SLSFKIDGKNIAEVNALSLADLKDWLADVKDKFSEKNKIIAHEILKEIETRLQFLLDVGL
DYLSLSRSSKTLSGGESQRIRLATQIGSQLVNVLYILDEPSIGLHQRDNERLIHSLKNLR
DIGNSVLVVEHDKDMILEADEVLDIGPRAGKFGGEILWQGKPKDLLKADTITAQYINGKR
KIEIPTERRAGSGKNIVLKGATGNNLKNVTLDIPLGKLVVVTGISGSGKSSLINGTLYPI
LNKHFYRAVQEPLPYKKIEGLENIDKIVDVDQTPIGRTPRSNPATYTGMFTDIRNLFAEL
PESKIRGYKPGRFSFNVKGGRCETCQGGGLKVIEMNFLPDVYVHCETCNGKRFNRETLEV
RYKGKSISDVLDMTIDEAVDFFQPIPKIFAKVKTLQDVGLGYITLGQQSTTLSGGEAQRI
KLATELAKRQTGNTLYILDEPTTGLHFEDVKILMDAINQLVELGNSFIIIEHNMDVIKLA
DHIIDVGPEGGKHGGQIVAQGTPEEIVKSKKSLTGKFLKRELE
NT seq
2832 nt
NT seq
+upstream
nt +downstream
nt
atgagtaaatcaacagaatatatagaagtttacggagcccgtgaacacaatcttaaaaat
attaacgtaaaaattccgcgcaacgaattggtggtgattaccggcctttccggaagtgga
aaatcgtcgttggcttttgatactatttttgcagaaggccagcgtcgttatattgaaact
ttttctgcttatgcacgccagtttctgggcggactggagcgtcctgatgtagataaaatc
gaaggactttctccggttattgccattgagcagaaaaccaccaataaaaacccgcgttct
accgtaggaacggttaccgaactgtacgattttcttcgtctattgtatgccagagtttcg
gatgcgtactctttatctacaggacagaagttggtaagctatactgaagatcagatcctt
gaaaccatcaaagaaaattataaaaaagagaaaatcatgcttttggcgccagtggtgcgt
tccagaaaaggacattatcatgaactctttgttcagatggccaaaaaaggttacgggcag
gcaagaattgatggtgagctgcaggatattgaatatgatttaaaacttgatcgttataaa
acccacgacatcgacattgtgatcgaccgttggattatcggggagaatgcttcggaaagc
agaatggaaaaatcattgcgtacagcaatggaaatgggagaaggaatcataggaattcag
aaactgggaagtacagatattgaatacttttccaaaaatctgatggatgcggaaacagga
cactctctggcgctgcctgaacccaatacattctcattcaactctccaaaaggaagctgc
ccgaattgtaaaggtctgggaaccattaaaaaaatcaataccgattactttatagacaat
ccgaaactatccatcaatcagggaggattattgccgttggaagatatcaagtccaacaaa
tggatcctgtcacagatcaaaaacattcttgagatctttggattaggattaacaacgcca
ttgcaggatattcctgaagaagcactggattatatctataacggatgtcataaagagttt
aataaagacctgaaatacgccggaattaccaaaaaaataaaaattggtttcgatggtctg
attgctttcatggaggagattattgatgatagagactcatatgaagctgttttattggaa
agacattttactacagaagaaatatgccctgaatgtcatggtacccgccttcagccttca
agcttaagttttaaaattgatggaaagaacattgcagaggtcaatgctttaagcttagcg
gatttaaaagactggctggctgatgttaaagataaattctccgaaaaaaataaaatcatt
gctcacgagatcttaaaagaaattgaaaccagacttcagtttttgctggatgtaggattg
gattatttaagtttgagcagaagttcaaaaacactttccggaggagaatcacagagaatc
cgtctggcaacgcagatcggatctcagttggtgaatgtattgtatattcttgatgaacca
agtatcgggcttcaccagagagataatgaaagactgatccattctctgaaaaacctgaga
gacattggaaattctgtattggtggtagaacatgataaagacatgatcctggaagccgat
gaggtgctggatattggtccgagagcaggaaaattcggaggagagattctttggcaggga
aaaccaaaagatcttttgaaagctgataccatcacggctcagtatattaatggaaaaaga
aaaatagaaattccgacagaaagaagagcaggaagcggtaaaaatattgttttaaaaggc
gctacagggaacaatcttaaaaacgtaaccctggatattcctcttggaaaactggttgta
gtaaccggaatttcaggtagcggaaaatcttctctgattaacggaacattatatccgatc
cttaacaaacatttctacagagcggttcaggaaccgttaccttacaagaaaattgaaggg
ttagagaatattgataaaattgtagacgtagaccagacaccaatcggaagaacgccacgt
tcaaatcctgctacttataccggaatgtttaccgatatcagaaacctttttgcagagctg
ccggaaagtaaaatccgtggatataaaccgggaagattctctttcaacgtgaaaggcgga
agatgcgaaacctgtcagggtggaggattgaaagtgattgaaatgaacttccttccggat
gtatacgtgcactgtgaaacctgcaacggaaaacgtttcaacagagaaaccctggaagtc
cgttacaaaggaaaatcaatttctgacgtattggatatgacgattgatgaagccgtagat
ttcttccagccgattcctaagatttttgcaaaagtgaaaacactacaggatgtaggtttg
ggatatattacgcttggacagcaatctacgactctttccggaggcgaagcacaacgtatt
aagttagcaactgaattagcaaaaagacaaaccggaaataccctttatatccttgatgaa
cccactacaggactgcattttgaagatgtgaaaatcctgatggatgccatcaatcagctg
gtagaactcggaaactcattcatcatcatcgaacataatatggatgtcattaaattagca
gaccatattattgacgtaggaccagaaggaggaaaacatggcggacagattgtagcacag
ggaactcctgaggaaattgtgaagtccaagaagagcttgacagggaagttcctgaaaaga
gaactggagtaa
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