Cupriavidus sp. USMAHM13: BKK81_00520
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Entry
BKK81_00520 CDS
T04762
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
ccup
Cupriavidus sp. USMAHM13
Pathway
ccup03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ccup00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BKK81_00520
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ccup03019
]
BKK81_00520
03400 DNA repair and recombination proteins [BR:
ccup03400
]
BKK81_00520
Enzymes [BR:
ccup01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
BKK81_00520
Messenger RNA biogenesis [BR:
ccup03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
BKK81_00520
DNA repair and recombination proteins [BR:
ccup03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
BKK81_00520
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
HRDC
DEAD
RecQ_Zn_bind
Helicase_C
HHH
ResIII
HHH_5
Motif
Other DBs
NCBI-ProteinID:
AOY97950
LinkDB
All DBs
Position
1:complement(93805..95655)
Genome browser
AA seq
616 aa
AA seq
DB search
MSSALAILKDVFGYHAFRGQQAEIIDHVAGGGDSLVLMPTGGGKSLCYQVPALLRQRAGQ
GTGIVVSPLIALMQDQVAALSEAGVRAAVLNSTLTSSEASAVERDLLAGRLEVLYVAPER
LMTPRFLDLLERTRVGLFAIDEAHCVSQWGHDFRPEYIQLSVLHERFPQVPRIALTATAD
ALTRQEIAERLALQDARVFLSSFDRPNIRYRIVEKDNARQQLLAFIKAEHANADGTHDSG
IIYCLSRKKVEETAAWLGAQGLKALPYHAGMDAQLRAQYQARFRVEEGIVMVATIAFGMG
IDKPDVRFVAHLDLPKSMEGYYQETGRAGRDGLPANAWMAYGLGDVVQQKRMIDESEADD
AHKRVSSSKLDALLGLCETAGCRRVRILAYFDEQSEPCGNCDTCLEPPATWDGTREAQMA
LSCVYRVAQASRVHFGATHLVDVLRGNASEKIRQWGHDKVSTFGIGADRSVAEWHAIFRQ
LIAHGLLMIDHGGHGALLLGESARQVLRGETTITLRRQASKPARGGERSASRGSRTDHTA
GMDEDALANWEALRKWRTATAREHGVPAYVIFHDATLAEIARSAPATLDELAEVPGIGAA
KLERYGEEILETLEGV
NT seq
1851 nt
NT seq
+upstream
nt +downstream
nt
atgtcgtccgcattggccattctcaaagatgtctttggctaccacgccttccgcggacag
caggccgaaatcatcgaccacgtggccggcggcggcgacagcctggtgctgatgcccacc
ggcggtggcaagtccctctgctaccaggtcccggccctgctgcgccagcgtgcaggccag
ggcacgggcatcgtggtgtcgccactgatcgcgctgatgcaggaccaggtggccgcgctg
agcgaggccggcgtgcgtgctgccgtgctcaattcgacgctgacctcgagcgaggcctcg
gcggtcgagcgcgacctgctggccgggcggctcgaggtcctctacgtggcccccgagcgg
ctgatgacgccgcgcttcctcgacctgctcgagcgcacccgcgtgggcctgttcgccatc
gacgaggcgcactgcgtatcgcagtgggggcacgatttccgccccgaatacatccagctc
tcggtgctgcatgagcgtttcccgcaggtaccgcgcatcgcgctgaccgccaccgccgac
gcgctgacgcggcaggagatcgccgagcgcctggcgctgcaggatgcacgcgtcttcctc
tccagcttcgaccggcccaatatccgctaccgcatcgtcgagaaggacaatgcgcgccag
caactgctggctttcatcaaggccgagcatgccaacgccgacggcacccatgacagcggc
atcatctactgcctgtcgcgcaagaaggtggaagagaccgcggcctggctcggcgcccag
ggcctcaaggccctgccttaccacgccggcatggatgcgcaactgcgcgcacagtatcag
gcgcgcttccgcgtggaggaagggatcgtgatggtggccaccatcgccttcggcatgggc
atcgacaagcccgacgtgcgcttcgtggcccacctcgacctgcccaagagcatggagggc
tactaccaggagaccgggcgtgccggccgcgacggcctgcccgccaatgcctggatggcc
tatggcctgggcgacgtggtgcagcagaagcgcatgattgacgaatccgaggccgacgac
gcgcacaagcgcgtgtcctcgtccaagctcgacgcgctgctcggcctgtgcgaaacggca
ggttgccgccgcgtgcgcatcctggcctatttcgacgagcagtccgagccgtgcggcaac
tgcgatacctgcctggagccgccggccacctgggacggcacgcgcgaggcgcagatggcg
ctgtcctgcgtctatcgggtggcccaggccagccgcgtgcatttcggtgccacccacctg
gtcgacgtgctgcgcggcaatgcgtcggagaagatccggcagtggggccacgacaaggtg
tccaccttcggcatcggtgccgaccgctcggtggcggagtggcatgccatcttccgccag
ctgatcgcccacggcctgctgatgatcgaccacggcggccacggcgcgctgctgctgggc
gagtcggcgcgccaggtgctgcgcggcgagaccaccatcacgctgcgccggcaggccagc
aagcccgcccgcggcggcgagcgctccgcatcgcgcggcagccgcaccgaccataccgcc
ggcatggacgaagacgcgctggccaactgggaggcgctgcgcaagtggcgcaccgccacc
gcgcgcgagcacggcgtgccggcctacgtcatcttccacgatgccacgctggcggagatc
gcgcgcagcgcgccggccacgctcgacgaactggccgaggtgccgggcatcggtgccgcg
aagctggagcgctatggcgaagagattctggagacgctcgagggcgtctga
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