Cupriavidus sp. USMAHM13: BKK81_05020
Help
Entry
BKK81_05020 CDS
T04762
Name
(GenBank) RNA helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
ccup
Cupriavidus sp. USMAHM13
Pathway
ccup03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ccup00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BKK81_05020
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ccup03019
]
BKK81_05020
Enzymes [BR:
ccup01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
BKK81_05020
Messenger RNA biogenesis [BR:
ccup03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
BKK81_05020
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
AAA_22
UTP25_NTPase-like
Gag_p24
P-loop_SecA
Sacchrp_dh_NADP
Motif
Other DBs
NCBI-ProteinID:
AOY98713
LinkDB
All DBs
Position
1:1107551..1109203
Genome browser
AA seq
550 aa
AA seq
DB search
MSFSELGLSDKLVRAVAEQGYTTPTPIQAQAIPAILKGGDLLAGAQTGTGKTAGFTLPML
QLLAGSNAAAPARGARTSVRALVLTPTRELAAQVEESVRNYGKYLRLRSMVMFGGVGINP
QIEQLKRGVDIVVATPGRLLDHVQQRTIDLSTIEILVLDEADRMLDMGFIHDIRKILNVL
PPKRQNLLFSATFSDEIRALADRLLDNPASIEVARRNTTAETVEQRIYPVDRERKRELLA
HLVRQHDWHQVLVFTRTKHGANRLAEQLSKEGLSALAIHGNKSQSARTRALSEFKAGTLR
LLVATDIAARGIDIDQLPHVVNFDLPNVPEDYVHRIGRTGRAGAEGEAVSLVCVDEHGLL
RDIERLIKRKLEQIVLPGFEVDPSIPPEPIQKARQSRGQGQGQGGRGRSGQEARAPRAPQ
GGAPAQPARARGEGQAAPRPAAGANGARPAGGQGGRGGNGGGQADRAGNAARGGQGGNGH
GGANGNGGNRGNREGGREGGREGGREGGRPGGARGNATPRPPQDGAQAPARGRRPSQQAA
LLGGRAKTTS
NT seq
1653 nt
NT seq
+upstream
nt +downstream
nt
atgtctttctccgaactaggcttgtccgacaagctggtgcgcgccgtggccgaacagggc
tacaccacaccgaccccgattcaagcgcaggcgattcccgccatcctcaagggcggcgac
ctgctggccggtgcccagacaggcaccggcaagaccgccggtttcaccttgccgatgctg
caactgctggccggctccaacgccgcggcgcccgcgcgcggcgcccgcacttcggtgcgc
gccctggtgctgacccccacgcgcgaactcgccgcccaggtcgaggagagcgtgcgcaac
tacggcaaatacctgcgcctgcgttccatggtgatgttcggcggcgtcggcatcaatccg
cagatcgagcagctcaagcgcggcgtggacatcgtcgtggccacgcccggccgtctgctc
gatcacgtgcagcagcgcaccatcgacctgtcgaccatcgagatcctggtgctggacgaa
gccgaccgcatgctcgacatgggcttcatccacgacatccgcaagatcctcaacgtcctg
ccgcccaagcggcagaacctgctgttctcggccacgttctcggacgagatccgcgcgctg
gccgaccgtctgctggacaacccggcctcgatcgaggtggcgcgccgcaacaccaccgcc
gagaccgtggagcagcgcatctacccggtcgaccgcgaacgcaagcgtgaactgctggcg
cacctggtacgccagcacgactggcaccaggtgctggtgttcacccgcaccaagcacggc
gccaaccgcctggccgagcagctcagcaaggaaggcctgtcggcgctggcgatccacggc
aacaagagccagtcggcgcgcacccgcgcgctctccgagttcaaggccggcacgctgcgc
ctgctggtggccaccgacatcgccgcgcgcggcatcgacatcgaccagttgccgcatgtg
gtcaacttcgacctgcccaacgtgcccgaggactacgtgcaccgcatcggccgcaccggc
cgtgccggcgccgagggcgaggcagtgtcgctggtctgcgtggacgagcatggcctgctg
cgcgacatcgagcgtctgatcaagcgcaagctcgagcagatcgtgctgccgggcttcgag
gtggatccgagcatcccgcccgaaccgatccagaaggcccgccagtcgcgcggccagggc
cagggccagggcggccgtggccggagcggccaggaagcgcgcgcaccgcgtgcgccgcaa
ggcggcgcgccggcccagccagcgcgcgcacgtggcgaaggccaggccgcgccgcggccg
gcggccggcgccaacggcgcacgtccggccggcggccagggcggccgcggtggcaacggt
ggcggccaggccgatcgtgccggcaatgccgcgcgtggcggccagggcggtaatggccac
ggcggcgccaacggtaacggcggcaaccgcggtaatcgcgaaggaggccgcgagggtggt
cgtgaaggcggccgtgaaggtggccgccccggcggcgcgcgcggcaacgcgacgccgcgt
ccgccgcaggatggcgcgcaggcgcctgcccgcggccgccgcccctcgcagcaggccgcg
ctgctcggcggccgtgccaagaccacgtcctga
DBGET
integrated database retrieval system
