Cupriavidus sp. USMAHM13: BKK81_07910
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Entry
BKK81_07910 CDS
T04762
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
ccup
Cupriavidus sp. USMAHM13
Pathway
ccup03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ccup00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BKK81_07910
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ccup03019
]
BKK81_07910
03016 Transfer RNA biogenesis [BR:
ccup03016
]
BKK81_07910
Enzymes [BR:
ccup01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
BKK81_07910
Messenger RNA biogenesis [BR:
ccup03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
BKK81_07910
Transfer RNA biogenesis [BR:
ccup03016
]
Prokaryotic type
tRNA degradation factors
BKK81_07910
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
PNPase
S1
KH_1
KH_2
KH-I_KHDC4-BBP
KH_KhpA-B
Peptidase_M13_N
DUF5813
S1_RRP5
OB_RRP5_4th
DUF4342
Motif
Other DBs
NCBI-ProteinID:
AOY99191
LinkDB
All DBs
Position
1:1801503..1803674
Genome browser
AA seq
723 aa
AA seq
DB search
MTMFNKVVKQFQWGQHSVRMETGEIARQAGGAVIVDVEDTVVLATVVAAKTPKPGQDFFP
LTVDYIEKTYAAGKIPGGFFKREGRPSELETLTSRLIDRPLRPLFPEGFYNDVQVVVHVL
SLNPEVPADIPALIASSAALAVSGIPFNGPVGAARVGYKDGQYLLNPTRAQIASSDLDLV
VAGTERAVLMVESEANQLSEEVMLGAVVYGHEQMQIAINAIHELVREGGKPEWDWTAPAK
NETLIAQVSEIGLPLLQETYQLRQKAARSQKLKEVYATVAAKLQEAGVEADKVEVGNILF
DLEAKIVRGQVLAGEPRIDGRDTRTVRPIEIRSSVLPRAHGSALFTRGETQALVVATLGT
KSDEQIIDALSGEYRDRFMLHYNMPPFATGETGRVGSPKRREIGHGRLAKRALIAVLPKE
DEFAYTIRLVSEITESNGSSSMASVCGGCLALMDAGVPVKAHVAGVAMGLILEGNKFAVL
TDILGDEDHLGDMDFKVAGTDHGITALQMDIKVQGITKEIMQVALAQAKDGRLHILGKMQ
EAMGHARTELSAHAPRMITMKIHPDKIREVIGKGGSTIQALTKETGTTIDIQEDGTITIA
STSTEGMAEAKRRIEGITAEAEVGKIYAGTVLKLLDFGAIVNILPGKDGLLHISEIVNER
VKDIKDWLKEGQQVRVKLIQADEKGRLRLSLKAALAEEGGTITPIAQAGEAAPAPAAGST
EQQ
NT seq
2172 nt
NT seq
+upstream
nt +downstream
nt
atgaccatgttcaacaaagtcgtcaagcaattccagtggggccagcactccgtgcgcatg
gagaccggcgagatcgcacgccaggctggcggcgcggtgatcgtcgatgtggaagacacc
gtggtgctcgccaccgtggtggccgccaagaccccgaaacccggccaggacttcttcccc
ctgaccgtcgactacatcgagaagacctacgccgccggcaagatcccgggtggcttcttc
aagcgcgaaggccgtccctcggagctggagacgctgacctcgcgcctgatcgaccgtccg
ctgcgcccgctgttcccggaaggcttctacaacgacgtgcaggtggttgtccacgtgctg
tcgctgaacccggaagtgccggccgacatcccggcgctgatcgcttcctcggccgccctg
gccgtgtccggcatccccttcaacggcccggtgggcgctgcccgcgtcggctacaaggac
ggccagtacctgctgaacccgacccgcgcgcagatcgccagctccgacctggacctggtc
gtggcgggtactgagcgcgccgtgctgatggtggaatcggaagccaaccagctctccgaa
gaggtgatgctgggcgccgtggtctatggccacgagcagatgcagatcgccatcaacgcc
atccatgaactggtgcgcgagggcggcaagccggagtgggactggaccgcgccggccaag
aacgagaccctgatcgcacaggtcagcgagatcggcctgccgctgctgcaggaaacctac
cagctgcgccagaaggccgcgcgcagccagaagctgaaggaagtctacgcgaccgtcgcg
gccaagctgcaggaagccggcgtggaagccgacaaggtcgaagtgggcaacatcctgttc
gatctggaagcgaagatcgtgcgtggccaggtcctggccggcgagccgcgtatcgacggc
cgcgacacccgcacggtgcgcccgatcgagatccgctcctcggtgctgccgcgcgcgcac
ggctcggcgctgttcacccgcggcgagacccaggcgctggtggtggccacgctgggcacc
aagagcgatgagcagatcatcgacgccctgtccggcgaataccgcgaccgcttcatgctc
cactacaacatgcccccgttcgccaccggcgagacgggccgcgtgggcagcccgaagcgt
cgcgagatcggccacggccgcctggccaagcgcgcgctgatcgccgtgctgccgaaggaa
gacgagttcgcctacaccatccgcctggtatcggagatcaccgagtcgaacggttcctcc
tcgatggcttcggtgtgcggcggctgcctggcgctgatggacgcgggcgtgcccgtcaag
gcccacgtggccggcgtggccatgggcctgatcctcgagggcaacaagttcgccgtgctg
accgacatcctcggtgacgaggaccacctcggcgacatggacttcaaggtggccggtacc
gaccacggcatcaccgcgctgcagatggacatcaaggtccagggcatcaccaaggaaatc
atgcaggtggcgctggcccaggccaaggacggccgtctgcatatcctgggcaagatgcag
gaagcgatgggccacgcacgcaccgaactgtcggcgcacgcaccgcgcatgatcaccatg
aagatccatccggacaagatccgcgaagtgatcggcaagggcggctcgaccatccaggcg
ctgaccaaggaaaccggcaccaccatcgacatccaggaagacggcacgatcaccatcgcg
tcgacctcgaccgaaggcatggcggaagccaagcgccgcatcgagggcattaccgcggaa
gccgaagtgggcaagatctacgccggtaccgtgctgaagctgctggacttcggcgccatc
gtcaacatcctgccgggcaaggacggcctgctgcacatctccgagatcgtcaacgagcgt
gtcaaggacatcaaggactggctgaaggaaggccagcaggtgcgcgtcaagctgatccag
gccgacgagaagggccgtctgcgcctgtcgctgaaggcggcgctggcggaagagggtggc
accatcaccccgatcgcgcaagccggcgaggcagcgcccgcaccggctgccggctcgacc
gagcagcagtaa
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