Cupriavidus sp. USMAHM13: BKK81_08600
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Entry
BKK81_08600 CDS
T04762
Name
(GenBank) excinuclease ABC subunit B
KO
K03702
excinuclease ABC subunit B
Organism
ccup
Cupriavidus sp. USMAHM13
Pathway
ccup03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ccup00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
BKK81_08600
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ccup03400
]
BKK81_08600
DNA repair and recombination proteins [BR:
ccup03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
BKK81_08600
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
BKK81_08600
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UvrB_inter
UvrB_3rd
UvrB
Helicase_C
ResIII
UVR
DEAD
AAA_30
UB2H
AAA_22
Kinesin
AAA_16
HEM4
Motif
Other DBs
NCBI-ProteinID:
AOY99317
LinkDB
All DBs
Position
1:1955034..1957124
Genome browser
AA seq
696 aa
AA seq
DB search
MSNLAAVAPDLDEEKFVTFPGSPFQLYQPFPPAGDQPAAIAGLVEGIEDGLSYQTLLGVT
GSGKTFTMANVIAQLGRPAIIFAPNKTLAAQLYSEFREFFPRNAVEYFVSYYDYYQPEAY
VPQRDLFIEKDSSINEHIEQMRLSATKSLLERRDTVIVATVSAIYGIGNPNEYHQMILTL
RAGDKISQRDVIARLIAMQYTRNETDFQRGTFRVRGDTIDIFPAEHAEMAVRVELFDDEI
DSLQYFDPLTGRVRQKIPRFTVYPSSHYVTPRETVLRAIEDIKVELRERLDFLYKENRLV
EAQRLEQRTRFDLEMLSELGFCKGIENYSRHLSGARPGEPPPTLVDYLPPDAMMFLDESH
VLIGQLNGMYNGDRARKTTLVEYGFRLPSALDNRPLKFDEFEGKMRQVVFVSATPAQYEQ
EHAGQVVEQVVRPTGLVDPVILVRPATTQVDDLLSEIHQRVSAGDRVLVTTLTKRMAEQL
TEFLSENGVKVRYLHSDIDTVERVEIIRDLRLGTFDVLVGINLLREGLDIPEVSLVAILD
ADKEGFLRAERSLIQTIGRAARNVNGTAILYADRMTDSMRRAIGETERRRAKQMAHNEAH
GITPRGVVKRIKDIIDGVYDAGEVRAELQAAEERARYEDMSEKQVAKEIKRLEKQMLDHA
KNLEFEKAAQVRDQLAELKRRVFGASGDEQGVPAVR
NT seq
2091 nt
NT seq
+upstream
nt +downstream
nt
atgtccaatcttgccgcggtcgcccccgacctggacgaggagaagttcgtcacctttccc
ggttcgccgttccagctctaccagccctttccgcccgccggcgaccagccggcagcgatc
gcggggctggtcgagggcatcgaggacggcctgtcgtaccagacgctgctgggcgtgacg
ggctcgggcaagaccttcaccatggccaacgtcatcgcgcaactggggcgtccggccatc
atcttcgcgcccaacaagacgctggcggcgcagctctattccgagttccgcgagttcttt
ccgcgcaatgccgtcgagtacttcgtcagctactacgactactaccagcccgaggcctac
gtgccgcagcgcgacttgttcatcgagaaagactcctcgatcaacgagcatatcgagcag
atgcggctgtccgccaccaagagcctgctggagcggcgtgacaccgtgatcgtggcgacc
gtgtccgccatctacggtatcggcaacccgaacgaataccaccagatgatcctgacgctg
cgggccggcgacaagatcagccaacgcgacgtcatcgcccgcctgatcgccatgcagtac
acgcgcaacgagacggatttccagcgcggtaccttccgcgtgcgcggcgacaccatcgac
atcttcccggccgaacatgccgaaatggcggtgcgggtcgagctgttcgacgacgagatc
gactcgctgcagtacttcgatccgctgaccgggcgcgtgcggcagaagatcccgcgcttc
accgtctatccgtccagccactatgtgacgccgcgcgagaccgtgctgcgtgccatcgag
gatatcaaggtcgagctgcgcgagcggctcgatttcctctacaaggagaaccggctggtg
gaagcgcagcggctggagcagcgcacccgcttcgacctcgagatgctgtccgagctgggc
ttctgcaaaggcatcgagaactactcgcgccacctgtcgggcgccaggccgggcgagccg
ccgcccacgctggtcgactacctgccgcccgacgccatgatgttcctggacgagtcgcac
gtcctgatcggccagctcaacggcatgtacaacggcgaccgcgcgcgcaagaccacgctg
gtcgagtacggcttccgcctgccttcggcgctggacaaccggccgctcaagttcgatgag
ttcgagggcaagatgcgccaggtggtgttcgtttccgccacgccggcgcaatacgagcag
gaacatgccgggcaggtggtcgagcaggtggtgcggccgaccgggctggtcgatcccgtc
atcctggtgcggccggccaccacccaggtcgacgacctgctgtccgagatccaccagcgc
gtcagcgccggcgaccgcgtgctggtgaccacgctgaccaagcgcatggccgaacagctc
accgagttcctgtcggaaaacggcgtcaaggtgcgctacctgcactcggacatcgacacc
gtcgagcgcgtggagatcatccgcgacctgcgcctgggcacgttcgacgtgctggtcggc
atcaacctgctgcgcgaaggcctggacatcccggaggtgtcgctggtggccatcctcgac
gccgacaaggaaggcttcctgcgcgccgagcgctcgctgatccagaccatcggccgcgcc
gcgcgcaacgtcaacggcaccgccatcctgtacgcggaccgcatgaccgattcgatgcgg
cgggccatcggcgagaccgagcgccgccgcgccaagcagatggcccacaacgaagcccat
ggcatcacgccgcgcggcgtggtcaagcgcatcaaggacatcatcgacggcgtctacgat
gccggcgaggtgcgcgccgagctgcaggccgccgaggagcgcgcgcgctacgaggacatg
agcgagaaacaggtcgccaaggagatcaagcggctggaaaagcagatgctcgaccacgcc
aagaacctggaattcgagaaggcggcacaggtgcgcgatcagctggccgagctcaagcgc
cgggtattcggcgccagcggcgacgagcagggcgtgccggcggtccgttag
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