Cupriavidus sp. USMAHM13: BKK81_08675
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Entry
BKK81_08675 CDS
T04762
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
ccup
Cupriavidus sp. USMAHM13
Pathway
ccup03410
Base excision repair
ccup03430
Mismatch repair
ccup03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
ccup00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
BKK81_08675
03430 Mismatch repair
BKK81_08675
03440 Homologous recombination
BKK81_08675
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ccup03400
]
BKK81_08675
DNA repair and recombination proteins [BR:
ccup03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
BKK81_08675
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
BKK81_08675
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
BKK81_08675
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH
DHHA1
RecJ_OB
Glyco_transf_4
Motif
Other DBs
NCBI-ProteinID:
AOY99330
LinkDB
All DBs
Position
1:complement(1971302..1972999)
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AA seq
565 aa
AA seq
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MTRIATRSFSTEHAASLAAAGLHPTLARILSARGVSRPDELATELPGLVAPGEMKGIGHA
ATYLADAIAAGRRLLIVADYDCDGATACAVGVRGLRMLGARVDYIVPNRFEYGYGLTPEI
VELAARQQPDVIVTVDNGIASVDGVAAANARGIDVVVTDHHLPGATLPEAAVIVNPNQPG
CPFPSKNLAGVGVMFYVLLALRAELRTRGVFDARTQPRLDTLLDLVALGTVADVVKLDSN
NRILVAQGLKRMRAGRMHAGVAALFRAAGREAARANTFDLGFGLGPRLNAAGRLADMSLG
IECLLTDDAGRAWEIAQELDGMNRERRDIEAGMQQEALQILEQPMAGLDPASRYTVSVFN
ETWHQGVIGIVASRLKEKFHRPTITFAPGDDATIKGSGRSIPGFHLRDALDLVSKRHPGL
LVKFGGHAMAAGLTLRADTFGQFMEAFEAVGREWLDEEQLARVIETDGDIDDGCFSPEFV
NLLDQQVWGQGFPAPTFCGEFDVVRQTVLKGKHLKLLLGRGAHRFDAIWFNHAEALGASA
LVAYRLDNNTFNGVTRVQMVIEHAQ
NT seq
1698 nt
NT seq
+upstream
nt +downstream
nt
atgacccgaatcgccacccgctccttctcgaccgagcacgctgcgtcgcttgccgccgcc
ggcctgcaccccaccctggcccgcatcctgtcggcgcgcggcgtcagccggcccgacgaa
ctggccaccgagctgcccgggctggtggcgccgggcgagatgaagggcatcgggcatgcc
gccacctacctggccgacgccatcgccgccggccgccgcctgctgatcgtggccgactac
gactgcgacggcgccaccgcctgcgcggtaggcgtgcgcggcttgcgcatgctgggcgcc
cgcgtcgactacatcgtgcccaaccgcttcgagtacggctacgggctgacgccggaaatc
gtcgagctggcggcacgccagcagccggacgtgatcgtcacggtggacaacggcatcgcc
agcgtcgacggcgtggcggcggccaatgcccgcggtatcgacgtggtggtgaccgaccac
cacctgcccggcgccacgctgccggaggcggccgtgatcgtcaatcccaaccagcccggc
tgcccgttccccagcaagaacctggcgggcgtgggcgtgatgttctatgtgctgctggcg
ctgcgcgccgagctgcgtacgcgcggtgtattcgatgcccgcacccagccgcgcctcgac
accctgctcgacctggtggcgctcggcaccgtggccgacgtggtcaagctcgacagcaac
aaccgcatcctggtggcgcagggcctcaagcgcatgcgcgccggccgcatgcacgccggc
gtggccgccctgttccgcgccgccggacgggaagcggcgcgcgccaacaccttcgacctc
ggcttcggcctgggcccgcgcctgaacgccgccgggcggctcgccgacatgtcgctcggc
atcgaatgcctgctgaccgacgacgccggccgcgcctgggagatcgcccaggaactggac
ggcatgaaccgcgagcggcgcgacatcgaggccggcatgcagcaggaggcgctgcagatc
ctggagcagccgatggcgggcctggacccggcctcgcgctacacggtcagcgtcttcaac
gagacctggcaccagggcgtgatcggcatcgtggcctcgcgcctgaaggagaagttccac
cgcccgaccatcacgttcgcccccggcgacgatgccaccatcaagggctccggccgctcc
atccccggcttccacctgcgcgacgcgctcgacctcgtctccaagcgccacccggggttg
ctggtgaagttcggcggccatgcgatggcggccggcctgaccttgcgcgccgacaccttc
ggccagttcatggaagccttcgaggcggtaggccgggagtggctggacgaggagcagctg
gcgcgcgtgatcgagaccgacggcgacatcgacgacggctgcttctcgccggagttcgtc
aacctgctcgaccagcaggtatggggccaaggcttccccgccccgaccttctgcggcgag
ttcgacgtggtgcgccagaccgtgctcaagggcaagcacctgaagctgctgctggggcgc
ggcgcgcaccgcttcgatgcgatctggttcaaccacgccgaggcgctcggcgccagcgcg
ctggtggcctaccggctggacaacaacaccttcaacggcgtcacgcgggtgcagatggtg
atcgagcacgcgcaataa
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