Cupriavidus sp. USMAHM13: BKK81_13715
Help
Entry
BKK81_13715 CDS
T04762
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
ccup
Cupriavidus sp. USMAHM13
Brite
KEGG Orthology (KO) [BR:
ccup00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ccup03019
]
BKK81_13715
Enzymes [BR:
ccup01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
BKK81_13715
Messenger RNA biogenesis [BR:
ccup03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
BKK81_13715
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
HA2_C
Helicase_C
HA2_N
DEAD
AAA_19
T2SSE
AAA_22
nSTAND3
NACHT
AAA_30
AAA_16
TsaE
Motif
Other DBs
NCBI-ProteinID:
AOZ00180
LinkDB
All DBs
Position
1:complement(3120423..3124526)
Genome browser
AA seq
1367 aa
AA seq
DB search
MSEQRPVKPLPPERQPAAPARSRPAPRPGPQSASPNGPQPPRRTAVGAADAAAPVRAGGP
APDGRAQRGARPRQGDAERPPRTPRPRRPANPLPEITFPEALPVSARREEIAAALRAHQV
VVVSGETGSGKTTQLPKICLSIGRGPGADGSGGLIGHTQPRRIAATSTAKRIAQELGTPI
GEHVGYQVRFNDTMSPGASVKLMTDGILLAETQNDPLLRAYDTIIIDEAHERSLNIDFLI
GYLRQILPRRPDLKVIITSATIDAQRFAEHFTLQGKPAPVIEVSGRLYPVEVRYRPIQQD
APGTPGTAGDPHKAAAARERDLYDGIVDAVDELCRLGAGDVLVFLPGEREIRETAEALRK
HHPPHTEILPLFARLSVQEQERVFRPSNARRIVLATNVAETSLTVPGIRYVVDTGLARVK
RYSYRNKVEQLQIESISQAAANQRAGRCGRVADGVCIRLYEESDFAGRPRFTDPEILRSS
LAAVILRMKALRLTAIESFPFIEPPLGRAIADGYQLLQELGAIDNKGDSYELTPVGRQLA
KLPLDPRVGRMILAARDHQCLREVLVIASALSVQDPRERPQEAQEAADQAHRKFVDEKSE
FLGWVRMWKWFEEAVAHKKTNRQLQEQCRAHFLSHVRLREWRDVHSQLLTTVTEQGWRLN
DSEPTFEQMHKALLTGLLGNIGCKLEEADGRGREYLGARGIKFHLWPGSFIARKVGRWIM
AAELIETSRLFARTLARIEPEWLEQVGGHLLKVSWSDPHWEKKAGQVLALERATLYGLVV
YQHRRVHYGPMNPAEAREIFIRRALVDGELDTRLAFFAHNQRLVREIENLEHKSRRQDVL
VDDELIYAFYDRAIPADIHQQASFEQWYKQAAADDRKLLYLNRDELMRHEAAGITTELFP
KVLSVAGVDMALTYHFEPGSHRDGVTLAVPLYALNQIRPERCEWLVPGMIKEKVHLLLKS
LPQKLRRHCVPLPDYAAGFVERRPFGEGELVDVLIADIREQTGTMVKRADFKLETLSAHH
FMNFKVVDEHGRQLEMGRNLAQLRAELGGQAQQSFQSLAARGAGQAQAAGGSGAAAVPAG
QYERLTAWSFGELPELLEVRKGNQTLFGYPALVDRGSHCDIEVFDDPQEAARIHRTGLRR
LFALQLREQVKFVEKNIPGLQQMAMQYMNLGTQEMLRDQIVALALERACLQEPLPRNAEE
FAARKDEGRARLSLLAQEIARLVGAVLAEYAGLPRKLLQAKSFAAAYADMEGQLGRLMGK
QFVIDTPYAQLVHYPRYLKGIAMRVDKIKGDPARDGQRMQEMAPLQQQWQRAEKQLRAQG
RGVEDARLDEFRWMLEELRVALFAQELRTPVPMSVKRLQKVWESMQR
NT seq
4104 nt
NT seq
+upstream
nt +downstream
nt
atgtcagaacaacgtcccgtcaagccgctgccgccggagcggcagcccgccgcgccggcc
aggtcccgcccggcgccccgtcccggccctcagtccgccagcccgaacggcccgcagccc
ccgcgccggaccgccgtaggcgcggccgacgccgctgcgccggtgcgtgccggcgggccg
gcaccggacggccgcgcgcagcgcggcgcgcgcccgcgccagggcgatgccgagcgtccc
ccacggaccccacggccgcgccgcccggccaatccgctgccggagatcacgttccccgag
gcgctgccggtttcggcgcggcgggaagagatcgccgcggcgctgcgcgcgcaccaggtg
gtggtggtgtcgggcgagaccggctcgggcaagaccacgcagttgcccaagatctgcctg
tcgatcgggcgcggtccgggcgcggacggcagtggcggcctgatcggccatacccagccg
cgccgcatcgcggccacctccaccgccaagcgcatcgcccaggagctgggtacgccgatc
ggcgagcacgtcggctaccaggtgcgcttcaacgacaccatgtcgcccggcgcctcggtc
aaactgatgaccgacggtatcctgctggccgagacgcagaacgatccgctgctgcgcgcc
tatgacacgatcatcatcgatgaggcgcacgaacgcagcctcaacatcgatttcctgatc
ggctacctgaggcagatcctgccgcggcggccggacctgaaggtcatcatcacctcggcc
accatcgacgcacagcgctttgccgagcacttcaccctgcagggaaagccggcgccggtg
atcgaggtcagcggccgcctgtacccggtggaggtgcgctaccggcctatccagcaggat
gcgccgggcacgccgggcacggcaggcgacccgcacaaggccgctgccgcgcgcgagcgc
gacctgtacgacggcatcgtcgatgccgtcgacgagctgtgccggctgggggcgggcgat
gtgctggtgttcctgccgggcgaacgcgagatccgcgagacggcggaggcgctgcgcaag
caccatccaccgcacacggagatcctgccgctgtttgcgcggctgtcggtgcaggagcag
gagcgggtgttccggccctccaacgcacgccgcatcgtgctggccaccaatgtggcggaa
acctcgctgaccgtgcccggtatccgctacgtggtcgataccggcctggcgcgcgtcaag
cgctactcctatcgcaacaaggtcgagcagttgcagatcgagtcgatctcgcaggcggcg
gccaaccagcgcgccggccgctgcggccgggtcgcggacggcgtctgcatccggctctat
gaggaatcggatttcgccggccgcccgcgcttcaccgatcccgagatcctgcgctcgtcg
ctggccgcggtgatcctgcgcatgaaggccttgcgcctgaccgcgatcgagtcattcccc
ttcatcgagccgccgctcggccgagccatcgccgacggctaccagctgctgcaggagctg
ggcgcgatcgacaacaagggcgacagctacgagctgacgcccgtcgggcgccagcttgcc
aagctgccgctggacccgcgcgtgggccgcatgatcctggccgcgcgcgaccaccagtgc
ctgcgcgaggtgctggtgatcgccagcgcgctgtcggtgcaggatccgcgcgaacgcccg
caagaagcccaggaggcggccgaccaggcccaccgcaagttcgtcgacgagaagtcggag
ttcctcggctgggtgcgcatgtggaagtggttcgaggaggcggtcgcgcacaagaagacc
aaccgacagttgcaggagcagtgccgcgcgcatttcctctcccacgtgcgcctgcgcgaa
tggcgcgacgtgcattcgcaactgctgaccaccgtgaccgagcagggctggcgcttgaac
gacagcgagccgaccttcgaacagatgcacaaggccctgctgaccggcctgctgggcaat
atcggctgcaagctggaagaggccgacggacgcggccgcgagtacctgggcgcccgtggc
atcaagttccacctgtggccgggttcctttatcgcgcgcaaggtggggcgctggatcatg
gcggcagagctgatcgagaccagccggctgttcgcgcgcacgctggcgcgcatcgagcca
gagtggctggagcaggtcggcggccacctgctcaaggtgagctggagcgacccgcactgg
gagaaaaaggccggccaggtgctggcgctggagcgcgccaccctgtacggcctggtggtc
taccagcaccggcgcgtgcattacgggccgatgaatccggccgaggcgcgcgagatcttc
atccggcgtgcgctggtcgacggcgagctggacacccggctggcgttcttcgcgcacaac
cagcgcctggtgcgcgagatcgagaacctcgaacacaagtcgcgccggcaggacgtgctg
gtcgacgatgagctgatctacgctttctacgatcgcgccatccccgccgacatccaccag
caggccagcttcgagcagtggtacaagcaggccgccgccgacgaccgcaagctgctctac
ctgaatcgcgacgagctgatgcggcacgaagcggctggcatcaccaccgagctgtttccc
aaggtgctgagcgtggccggcgtcgacatggcgctgacctaccatttcgagccgggcagc
catcgcgacggcgtgacgctggcggtgccgctgtatgccctcaaccagatccgccccgag
cgctgcgaatggctggtgccgggcatgatcaaggagaaggtgcacctgctgctgaagtcg
ctgccgcagaagctgcgccgccactgcgtgccgctgcccgactacgcggccggcttcgtc
gagcgccgtcccttcggcgaaggtgagctggtggacgtgctgatcgccgatatccgcgag
cagaccggcaccatggtcaagcgtgccgacttcaagctcgagaccttgtccgctcaccac
ttcatgaatttcaaggtggtcgacgagcacggccgccaactggagatggggcgcaacctg
gcgcaactgcgcgccgaactcggcgggcaggcgcagcagtcgttccagagcctggccgcg
cgcggcgcgggtcaggcgcaggcggccggcggcagtggtgccgccgcagtgccggccgga
cagtacgagcggctgacggcctggtcgttcggcgagctgccggagctgctggaggtgcgc
aagggcaaccagacgctgttcggctatccggcgctggtcgaccgcggcagccactgcgac
atcgaagtgttcgacgatccgcaggaagcagcgcgcatccaccgcaccggattgcgccgc
ctgttcgcgctgcagctgcgcgagcaggtcaagttcgtcgagaagaacatcccggggctg
cagcagatggcgatgcagtacatgaacctgggcacgcaggaaatgctgcgcgaccagatc
gtggcgctggcgctggagcgtgcctgcctgcaggagccgctgccgcgcaacgcggaggag
ttcgccgcgcgcaaggacgagggcagggcgcgcctgtccctgctcgcgcaggagatcgcg
cggctggtcggcgcggtgctggccgagtatgcggggctgccgcgcaagctgctgcaggcc
aagtccttcgccgccgcctacgcggacatggaagggcagctcgggcggctgatgggcaag
cagttcgtcatcgacacgccctatgcccagctggtgcactatccgcgctacctgaagggt
atcgccatgcgtgtcgacaagatcaagggcgatccggcgcgcgatggccagcgcatgcag
gaaatggcgccgctgcagcagcagtggcagcgtgccgaaaagcagttgcgtgcgcaaggg
cgcggcgtggaagacgccaggctcgacgagttccgctggatgctggaggaactgcgcgtg
gcgctcttcgcgcaggagctgcgcacgccggtaccgatgtcggtcaagcggctgcagaag
gtgtgggagtcgatgcagcgctga
DBGET
integrated database retrieval system
