Cupriavidus sp. USMAHM13: BKK81_13995
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Entry
BKK81_13995 CDS
T04762
Name
(GenBank) ATP-dependent exonuclease
KO
K16898
ATP-dependent helicase/nuclease subunit A [EC:
5.6.2.4
3.1.-.-]
Organism
ccup
Cupriavidus sp. USMAHM13
Brite
KEGG Orthology (KO) [BR:
ccup00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ccup03400
]
BKK81_13995
Enzymes [BR:
ccup01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
BKK81_13995
DNA repair and recombination proteins [BR:
ccup03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
AddAB pathway proteins
BKK81_13995
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
AAA_19
UvrD_C
UvrD_C_2
PDDEXK_1
AAA_22
DEAD
Motif
Other DBs
NCBI-ProteinID:
AOZ00232
LinkDB
All DBs
Position
1:complement(3183859..3187488)
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AA seq
1209 aa
AA seq
DB search
MSVHAYLRDGLPVGEAEFTAAACDPARSVVVEACAGSGKTWLLVARLLRLLLAGAAPHEI
LAITFTRKAAEEMRDRLLEVLAQLAQGADDEVLAALRLRGLSDAEARAALPRARTLHARV
LAAPGRMAIDTFHGWFGTLLRGAPLSSGIVPGASLREDALRLRREAWAPFWRSLGAPQYA
ELRQAYETLVDAIGEFQARAWLDAMFHARSEWWALQEAGPPELALAEQLGDDARLDVVAQ
ALLEDGWLADGQALATRLGGGGKTEQNHAARLEEGLSAVRAWREGGAHEGEPAAQAFARL
RAAFFTAAGAPRALRRTSGLAKAAGGEAMVDALLQAHAGLCEQLDELAARRCEAAVLALN
LAVYRLGDALLQRYQQLKHEQRAMDFADLEWLAARLMADEETATYLQVRLDARYRHLLLD
EFQDTNPLQWRILQGWLAGYAGTGQRPSIFLVGDPKQSIYRFRRADARLFESAREMLQRE
FGATVLRTNRTRRNRPAVLDWVNAVFDAAREQGRYPLYETQTTALPGQGGPLWLLPLVEP
EAAPGKAETGEDGSSETGTQAGEPPDAQADAGGHRDTLREPRSAGGDSLRLEEGRRVAAW
LQRLRATVMVQDHAGERPVRWSDIYLLVRRKSYLPDYERALREAGIPCLSPRRGGLLATL
EALDLSALLAFLMTPESDLDLAHVLKSPLVGASDDDLVALAQQPGEGGWWARLQAGGVPE
GASAALGEGVARLRGWLAIAPQRPVHDLIDHIYHSGEVRRRYAEAAPASIREQVLANLDA
FLKLSLDLDGGRYPSLPKFIDELHEIRRGDETESPDEGGMSDDPEQDAADAADGQGLDAV
HILTVHAAKGLEAPFVVLLDANHSEPAADRSGILVDWPPQAQVPRHFSAYGKRSERGRAR
APLFETEAALAERENWNLLYVAMTRAQQGLLVSGVKGRAARGAEEGNDAEIAGSWYVRLQ
AAGVAEAVAARPGEGASPAGEGARAAPQAVRYTDFRTRYRDAERLAARAGTAEAAEGAEG
AEDVVQEEAIVFDAAAARHGELLHALLERLTRYPHAFGAVPAVETVLRWFPLAGVGSAQA
RELWRRQAQAAVDAARAMLDAPALAALLSGRGALSARNEVELYDARGRLLRIDRLVEYPE
RVVIIDYKLRLLPQEHADYAAQLGRYAAALGPMFPGRRIEAGVATADGEWIPLERLRAGA
RQPQQGSLF
NT seq
3630 nt
NT seq
+upstream
nt +downstream
nt
atgagcgtgcatgcctatctgcgtgacggcctaccggtcggcgaagccgagttcaccgcc
gctgcctgcgatcccgcccgttcggtggtggtcgaggcctgcgccggcagcggcaagacc
tggctgctggtggcgcgcctgctgcgcctgctgctggccggcgcggcgccgcacgagatc
ctcgccatcaccttcacgcgcaaggcggcggaggagatgcgagatcgcctgctggaggtc
cttgcccagctcgcgcagggggcggacgacgaggtactggcggcattgcggctgcgcggc
ctgagcgacgccgaggcgcgcgccgcgctgccgcgcgcgcgcaccttgcacgcacgcgtg
ctggcggcgccgggacgcatggcgatcgataccttccacggctggttcggtaccctgctg
cgcggcgcgccgctgtcctccggcatcgtgccgggagcgtcgttgcgcgaggatgcgctg
cggctcaggcgcgaggcctgggcgccgttctggcgctcgctcggcgcgccgcagtatgcg
gagctgcgccaggcctacgagacgctggtcgacgccatcggcgaattccaggcgcgggcc
tggctcgatgccatgttccacgcacgcagcgaatggtgggcgctgcaggaggccggtccg
cccgagctggcgctggcggagcagctcggcgacgacgcgcgcctcgacgtggtggcgcag
gcgctgctggaagacggctggctggccgacggccaggcgttggccacgcgcctgggcggc
ggcggcaagaccgagcagaaccatgccgcgcgcctcgaggaggggctcagcgcggtacgc
gcctggcgcgagggcggcgcgcacgaaggcgagccggccgcccaggccttcgcgcgcctg
cgcgccgctttcttcaccgcggccggcgcgccgcgcgcgctgcgccggaccagcggcctg
gccaaggccgccggcggcgaagcgatggtggatgccttgctgcaggcgcatgcgggactg
tgcgagcagctcgacgaactggccgcgcgccgctgcgaggcggccgtgctggccttgaac
ctggccgtctaccgcttgggcgatgccttgctgcagcgctaccagcagctcaagcacgag
cagcgcgcgatggactttgccgatctcgaatggctggcggcgcgcctgatggcggacgag
gaaaccgccacctacctgcaggtccgcctcgacgcgcgctaccgccatctgctgctcgac
gagttccaggacaccaatcctctgcagtggcgcatcctgcaaggctggctggccggctac
gccggcaccgggcagcgcccgtcgattttcctggtcggggatccgaaacagtccatctac
cgcttccgccgtgcggatgcgcgcttgttcgagagcgcgcgcgagatgctgcagcgcgag
ttcggcgccaccgtgctgcgcaccaatcgcacgcgccgtaaccgtccggcggtgctggac
tgggtcaatgcggtgttcgatgccgcgcgcgagcaggggcgttaccccctctacgaaacg
cagaccacagccttgccgggccagggcggtccgctgtggctgctgccgctggtggagccc
gaggcggctccaggcaaggcggagacgggcgaagacggaagctcggaaaccggcacgcag
gccggtgagccgcccgatgcgcaggccgatgccggcgggcatcgcgatacgctgcgcgag
ccgcgcagtgccggtggcgactccctgcgcctcgaggaaggcaggcgcgtggccgcctgg
ttgcagcgcctgcgcgcgaccgtgatggtgcaggaccacgcgggtgaacgcccggtgcgc
tggagcgacatctacctgctggtccggcgcaagagctatctgcccgactacgagcgggcc
ctgcgcgaggccggcattccctgcctgagcccgcgccgcggcggcctgctggccacgttg
gaagcgctcgacctgtcggcgctgctggctttcctgatgacgcccgaatcggacctcgac
ctggcgcacgttctgaaaagcccgctggtcggcgcctccgacgacgacctggtcgcactc
gcgcagcagccgggcgagggcggctggtgggcgcgcctgcaggccggtggcgtacccgag
ggtgcctccgccgcgctgggcgagggcgtggcgaggctgcgcgggtggctggcgatcgcg
ccgcagcggccggtgcacgacctgatcgaccacatctaccacagcggcgaggtgcggcgc
cgctacgccgaggccgcgccggccagcatccgcgagcaggtgctggccaacctggacgct
ttcctgaagctgtcgctcgatctcgatggcggccgctatccgagcctgccgaagttcatc
gatgaactgcacgagatccggcgtggcgacgagacggagagcccggacgagggcggcatg
agcgacgatcccgaacaggacgcggccgacgccgccgacggccaggggctggacgccgtg
cacatcctgaccgtgcatgccgccaaggggctggaggcgcccttcgtggtgctgctcgat
gccaatcacagcgagcccgcggccgaccgcagcggcattctggtcgactggccgccacag
gcgcaggtgccgcggcatttctcggcctacggcaagcgcagcgagcgcggccgcgctcgc
gcgccgctgttcgagacggaagccgcgctggccgagcgtgaaaactggaacctgctctat
gtggccatgacgcgcgcgcagcaggggctgctggtcagcggtgtcaaggggcgcgcggcg
cgcggcgcggaggaaggcaacgatgccgagatcgcgggcagctggtacgtgcggctgcag
gcggccggcgtggccgaggcggtcgcggcgcgtccgggcgaaggcgcctcgcctgccggc
gaaggcgcgcgcgcggcgccgcaagccgtgcgctacacggacttccgcacgcgctaccgc
gatgccgagcggctggcggcacgggccgggaccgcggaggcggcagagggcgcggaaggt
gcggaagacgtagtgcaggaggaggccatcgtcttcgatgccgccgccgcgcggcatggc
gaactgctgcatgcgctgctggaacggctgacgcgttatccgcatgcgttcggcgcggtt
cccgcggtggagacggtgctgcgctggttcccgctggccggcgtgggcagcgcgcaggcg
cgcgagctgtggcgccggcaggcgcaggccgcggtggatgccgcgcgcgcgatgctggac
gcgccggcgctggcggcgctgctgtcggggcgcggcgcgctgagcgcgcgcaatgaggtc
gaactgtacgatgcgcgcggcaggctgctgcgcatcgaccggctggtcgaatacccggag
cgcgtggtcatcatcgactacaagctgcgcctgctgccccaggagcatgcggactatgcc
gcccagctcgggcgctatgcggccgcactcggcccgatgttcccggggcggcgcatcgaa
gccggagtggccacggccgacggcgagtggattccgctcgagcgcctgcgcgccggcgca
cgccagccgcagcagggctcgctgttctga
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