Cupriavidus sp. USMAHM13: BKK81_14710
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Entry
BKK81_14710 CDS
T04762
Name
(GenBank) ribonuclease E/G
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
ccup
Cupriavidus sp. USMAHM13
Pathway
ccup03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ccup00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BKK81_14710
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ccup03019
]
BKK81_14710
03009 Ribosome biogenesis [BR:
ccup03009
]
BKK81_14710
Enzymes [BR:
ccup01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
BKK81_14710
Messenger RNA biogenesis [BR:
ccup03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
BKK81_14710
Ribosome biogenesis [BR:
ccup03009
]
Prokaryotic type
rRNA processing factors
BKK81_14710
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
AOZ00348
LinkDB
All DBs
Position
1:3337233..3340379
Genome browser
AA seq
1048 aa
AA seq
DB search
MKRMLFNATQQEELRVAIVDGQKLIDIDIEAAGREQRKGNIYKGVITRIEPSLEACFVNY
GEERHGFLPFKEVARAYFKEGIDVRNARIQDALHEGQELIVQVEKEERGNKGAALTTFIS
LAGRYLVLMPNNPRGGGVSRRIEGEDRQELRETMAQLTVPEGMSIIARTAGIGRSAEELQ
WDLNYLLQLWKAIDGAAGDNRAPLLIYLESSLVIRAIRDYFQPDIGEILIDTDEIYEQAR
AFMSVVMPDNLNRVKKYRDDVPLFSRFQIEHQIESAYSRMVMLPSGGAIVIDHTEALVSV
DVNSARATKGADIEETALRTNLEAADEIARQLRLRDLGGLIVIDFIDMESSKAQKDVETR
LKDALRHDRARVQMGKISRFGLMELSRQRLRPSLSEGSHITCPRCNGTGHIRDTESSALQ
VLRIIQEEAMKENTAAIHCQVPVEVAAFLLNEKRQEINLIELRFKVNVLLIPNKHLETPH
YKLERLRHDDPRLEDSMASYKMAEAAAKELEADTSYSSRKKEDAKPRQEAAVKGITPEQP
APVSTPRPERAPRQEVPAAPPVPATQPVASGGFIAWLKGLFGAKPAAPAVEPAKPVAAEA
RTGEGRRERGPRGERTERGERGQGGRGERGDRGERTDRGERAERGERQSGRGQRGERGER
PATEQKGERQPRPQRQPADLQAAPASRQAEAGQERRERGERPDRGERGERSERGERAERG
ERRERNRDRQRERGEARESEGAEEVAALAAVPEGLSAQPGTAAAAREAEDSARLDLPEGT
EGAEAAEAGEGEERRRRNRRGRNRYRREREDGQQNGEAGEAGDVGAAPAPLAAVGAEADA
VATAAVTQVEAVAVARVEPVAETVAAAQPAIAAAAAAAEPAPVAVEHAAVEAAASATPAV
PLTEPAHAEPAPVTVAAAAPIQPAPATTVAEPVAEPAIAAVPAPEAAAVAAPAVAAVEAA
PAAAVVAPAPAVQAAAPGNLEPMLAAAGLQWVHTDSDKYRAAQEAAARIVPAPRVPRERK
PLPPLPEGPMILVETGGNQVEMISSAHQ
NT seq
3147 nt
NT seq
+upstream
nt +downstream
nt
atgaaacgcatgcttttcaatgcgacgcagcaagaggaactgcgcgtcgcgattgtcgat
ggccagaagctgatcgacatcgacatcgaggccgccgggcgcgaacagcgcaagggcaat
atctacaagggcgtgatcacccgtatcgagccctcgctggaggcctgcttcgtcaactac
ggcgaagaacgccacggcttcctgccgttcaaggaagtcgcccgcgcctatttcaaggaa
ggcatcgacgtgcgcaatgcacgcatccaggatgccttgcacgaaggccaggagctgatc
gtccaggtagaaaaggaagagcgtggcaacaagggcgccgccctgaccaccttcatctca
ctggccggccgctacctggtgctgatgcccaacaacccgcgcggcggcggcgtgtcgcgc
cgcatcgagggcgaggaccgccaggaactgcgcgagaccatggcgcagctgaccgtgccc
gaaggcatgagcatcatcgcccgtaccgcgggcatcggccgctcggccgaggaactgcag
tgggacctgaactacctgctgcaattgtggaaggccatcgacggcgcagccggcgacaac
cgggccccgctgctgatctacctggaatcgagcctggtgatccgcgccatccgcgactac
ttccagcccgatatcggcgagatcctgatcgataccgacgagatctacgagcaggcccgc
gccttcatgagcgtggtgatgccggacaacctgaaccgggtcaagaagtaccgcgacgat
gtccccctcttctcgcgcttccagatcgagcaccagatcgagtcggcctattcgcgcatg
gtgatgctgccgtccggcggcgccatcgtgatcgaccacaccgaggccctggtctccgtg
gacgtgaactcggcccgcgccaccaagggcgccgacatcgaggaaaccgcgctgcgcacc
aacctggaagcggccgatgagattgcccgccagttgcgcttgcgcgacctgggcggcctg
atcgtgatcgacttcatcgacatggagtcgagcaaggcccagaaggacgtggaaacccgc
ctgaaggacgcgctgcgccatgaccgcgcccgcgtgcagatgggcaagatcagccgcttc
ggcctgatggagctgtcgcgccagcgcctgcgcccgtcgctgtcggagggctcccacatc
acttgcccgcgctgcaacggcacgggccatatccgcgatacggaatcgtccgccctgcag
gtgctgcgcatcatccaggaagaggcgatgaaggaaaacaccgccgccatccactgccag
gtaccggtggaggtggccgccttcctgctgaacgagaagcgccaggaaatcaacctgatc
gaactgcgcttcaaggtcaatgtgctgctgatccccaacaagcacctggagacgccgcac
tacaagctggaacgcctgcgccacgacgatccgcgcctggaggacagcatggccagctac
aagatggccgaggccgccgccaaggagctggaagccgataccagctacagcagccgcaag
aaggaagatgccaagccgcgccaggaagccgcggtgaagggcatcacgcccgagcagccg
gccccggtgtcgacgccgcgccccgagcgcgcgccgcgccaggaagtgcctgctgcgccg
cccgtgcctgccacccagccggtcgccagcggtggcttcatcgcctggctgaagggcttg
ttcggcgccaagccggcagccccggccgtcgagcccgccaagccagtggccgccgaggca
cgcaccggtgaaggccgccgcgagcgtgggccgcgcggcgaacgcaccgaacggggtgag
cgtggccagggtgggcgcggcgagcgcggagaccgtggtgagcgcaccgatcgcggtgag
cgcgccgagcgcggcgaacgccagagtggccgcggccagcgcggcgaacgcggcgagcgg
ccggcgacggagcagaagggcgaacgccagccgcgtccgcagcgccagccggccgacctc
caggccgcaccggcctcccgccaggcggaagccggccaggaacgccgcgagcgcggcgag
cgccccgaccggggtgagcgtggcgagcgctcggaacgcggtgaacgggccgaacgcggc
gaacgtcgcgagcgcaaccgtgaccgccagcgcgaacgcggcgaagcccgcgagagcgag
ggcgccgaggaagtcgcagcacttgccgccgtgccggagggcctctcagcccagcccggc
accgccgctgcggcacgtgaagccgaggacagcgcacgcctcgacctgccggaaggcacc
gaaggcgctgaagcggccgaggctggcgagggcgaagaacgccgccgccgcaaccgccgc
ggccgcaaccgctatcgccgcgagcgcgaggacggtcaacagaatggcgaagctggtgaa
gccggcgacgtcggtgcggcgccggcgcctctggccgcagttggcgcggaggcggacgca
gtcgccaccgccgcggtgacgcaggtcgaggcagtcgccgtggcacgcgtcgagccggtg
gccgaaaccgtggctgccgcgcaaccggcaatcgcggcagcggcagcggcagccgagccc
gctccggtggcagtcgagcatgcagccgtcgaagccgctgcgagcgccacgccagcggtt
ccgctgaccgagccggcccatgccgagcccgctccggtcacggtggcagccgccgcgccg
atccagccggcaccggccacgacggtggccgaaccggtggccgaaccggcgattgccgca
gtcccggcaccggaagccgctgccgtagcagcacccgcggtcgcggccgtggaagctgcg
ccggcggctgccgtcgtggctcccgcccctgccgtgcaggccgctgcgccgggcaacctg
gagccgatgctggctgctgccggcctgcagtgggtccataccgacagcgacaagtaccgt
gccgcccaggaggccgccgcccgcatcgtgcccgcgccgcgggtgccgcgcgagcgcaaa
cccctgcctccgctgcccgagggtccgatgatcctggtggaaaccggcggcaatcaggtt
gaaatgatctcttccgcgcaccagtaa
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