Cupriavidus sp. USMAHM13: BKK81_17215
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Entry
BKK81_17215 CDS
T04762
Name
(GenBank) ribonuclease II
KO
K01147
exoribonuclease II [EC:
3.1.13.1
]
Organism
ccup
Cupriavidus sp. USMAHM13
Brite
KEGG Orthology (KO) [BR:
ccup00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
ccup03016
]
BKK81_17215
Enzymes [BR:
ccup01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
BKK81_17215
Transfer RNA biogenesis [BR:
ccup03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
BKK81_17215
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
LptE
Motif
Other DBs
NCBI-ProteinID:
AOZ00792
LinkDB
All DBs
Position
1:complement(3892296..3894410)
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AA seq
704 aa
AA seq
DB search
MQLLFEEGGEIRAGTVLSQQGEAYQVELPAGKRTKVKSRDVLLQFAQPSAAELMRQTEAL
VAETDLDFLWECAPEEEFGFAELAAEYYGAEAGPVQQAALAMALHGSPVYFRRKGRGRYL
RAPEDQLKAALAALERKRQQALVQAEYEAQLKARQLPEAFRGKVMSLLFKPDKNSLEYKA
MDAACIALGMTPMRLMLECGGVESARALHEAKFLAECFPKGIGFPAVDVSEPPADLPVAD
VQAFSIDDVTTTEIDDALSVVTLPDGKLRVGIHIAAPGLGIRRGDALDAIARQRLSTVYF
PGDKITMLPDAVVERYTLQEGRQCPALSLYVTVDPSLPMILGSETRAELVPIAANLRHNL
LEDVVTEQALAEGSGDYPFRDELAKLWQFAGYLYDERQKARLASGLRPEVHNRADYSFYI
DQLEGGGERVRIEQRRRGSPLDKIVAELMILANSTWGKLLADHGVPGIYRTQKAWGMHRT
RMQTYPAPHEGLGVAQYAWSTSPLRRYVDLVNQWQIIAVAQHGGVAKLVAPFKPKDADLL
AAVADFEGTYAAYADHQSTMERYWCLRWLEQEKRQRMMASVLKDGAVRFADIPLVARVPE
LMQAARGTQVMLEIASTDELSLEVSCRVQEVFAGDVDLTDEMLELDEEASEVSAEAAAEA
AAEDAAEQAAEQVAEPSAQPSADADGAPAGEASGARDTGAGSGA
NT seq
2115 nt
NT seq
+upstream
nt +downstream
nt
atgcagttgctgttcgaagaaggcggcgagatccgcgccggcaccgtactgagccagcag
ggcgaggcctaccaggtggagctgcctgccggcaagcgcaccaaggtcaagtcccgcgat
gtgctgctgcagttcgcccagccgtcggccgccgaactgatgcgccagaccgaggcgctg
gtggccgagaccgacctcgatttcctgtgggaatgcgcaccggaagaggaattcggcttc
gccgagctggcggccgagtactacggggcggaggccggtccggtgcagcaggccgcgctg
gccatggcgctgcacggcagtcccgtctatttccgccgcaagggccgcggccgctacctg
cgcgccccggaagaccagctcaaggcggcgctggcggcgctcgagcgcaagcgccagcag
gcactggtgcaggctgagtacgaggcgcagctgaaggcgcgccagttgccggaggccttc
cgcggcaaggtgatgagcctgctgttcaagccggacaagaacagcctggaatacaaggcg
atggacgccgcctgcatcgcgctgggcatgacgccgatgcgcctgatgctggaatgcggc
ggcgtggagagcgcgcgtgcgctgcacgaggccaagttcctggcggaatgcttccccaag
ggcatcggctttcccgccgtcgacgtgtccgagccgccggccgacctgccggtggccgac
gtgcaggccttctcgatcgacgacgtcaccaccaccgagatcgacgacgcgctgtcggtg
gtcacgctgccggacggcaagctgcgcgtgggcatccacatcgccgcgccaggcctgggc
atccgccggggcgacgcgctcgacgcgatcgcgcgccagcgcctgtccacggtctatttc
cccggtgacaagatcaccatgctgccggacgcggtggtcgagcgctacacgctgcaggaa
ggccggcagtgcccggccctgtcgctgtacgtgaccgtcgatccgagcctgccgatgatc
ctgggcagcgagacgcgcgccgagctggtgccgatcgcggccaatctgcgccacaacctg
ctcgaagacgtggtgaccgaacaggcgctggccgagggttccggcgactatcccttccgt
gacgaactggccaagctgtggcagttcgccggctacctgtacgacgagcgccagaaggca
cgcctggccagcggcctgcgcccggaggtgcacaaccgcgccgactacagcttctatatc
gaccagctcgaaggtggcggcgaacgcgtgcgcatcgagcagcgccggcgcggctcgccc
ctggacaagatcgtggccgagctgatgatcctggccaacagcacctggggcaagctgctg
gccgaccacggcgtgccgggcatctaccgcacgcagaaggcctggggcatgcatcgcacc
cgcatgcagacctatccggcgccgcacgagggcctgggtgtggcccagtacgcctggagc
acctcgccgctgcgccgctatgtcgacctggtcaaccagtggcagatcatcgcggtggca
cagcacggcggtgtcgccaagctggtggcgccgttcaagcccaaggatgccgacctgctg
gccgccgtggcggacttcgaagggacctacgccgcctacgccgaccaccagtcgaccatg
gagcgctactggtgcctgcgctggctggagcaggagaagcgccagcgcatgatggcttcg
gtgctgaaggatggcgcggtccgcttcgccgacatcccgctggtggcgcgcgtacccgag
ctgatgcaggcggcgcgcggcacacaggtgatgctggagatcgcttccaccgacgaactg
tcgctcgaggtgtcgtgccgtgtgcaggaggtcttcgccggcgatgtcgacctgaccgac
gagatgctggagctcgacgaggaggcctcggaagtgtcggccgaggcggctgccgaagcc
gcggccgaggacgcagcagaacaggcggcagagcaggtggcggagccgtctgcgcaaccg
tcggcggatgccgacggggctccggccggcgaggcgtcgggcgcgcgcgacaccggcgcc
ggcagcggcgcctga
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