Corvus cornix (hooded crow): 104683377
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Entry
104683377 CDS
T03546
Symbol
PDZRN3
Name
(RefSeq) LOW QUALITY PROTEIN: E3 ubiquitin-protein ligase PDZRN3
KO
K15682
ligand of Numb protein X 3/4 [EC:
2.3.2.27
]
Organism
ccw
Corvus cornix (hooded crow)
Brite
KEGG Orthology (KO) [BR:
ccw00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
ccw04121
]
104683377 (PDZRN3)
Enzymes [BR:
ccw01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
104683377 (PDZRN3)
Ubiquitin system [BR:
ccw04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Ligand of Numb proteins
104683377 (PDZRN3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PDZ
PDZ_6
PDZ_2
zf-C3HC4_2
zf-C3HC4
zf-RING_UBOX
zf-RING_2
Sina_ZnF
zf-C3HC4_3
zf-RING_5
zf-C3HC4_4
Prok-RING_4
zf-TRAF
PDZ_Tricorn
TRAF3_RING
zf-rbx1
U-box
RING_XB3-XBAT31
Motif
Other DBs
NCBI-GeneID:
104683377
NCBI-ProteinID:
XP_039415064
LinkDB
All DBs
Position
12:complement(17469123..17600175)
Genome browser
AA seq
1061 aa
AA seq
DB search
MGFELDRFSGDVDPDFKCNLCNKVLEDPLTTPCGHVFCAGCVLPWVVQQGSCPVNCQRIS
TKELNHVLPLKSLILKLDIKCDNHARGCEAVVPLQHLGEHAETCDFSPAKCRNRGCRQVL
NLRDVEAHMRERCEARPAGLCEQGCGLVLTHGERRAGGHGCLRALRAHGAALQARAAALE
KALKKEALRAGKREQSLLSRLAAAQLELQVTALRYQKRFTQYSARLDALARARAASPGKG
EETKALTLVLHRDSGSLGFNIIGGRPCVDNQDGSSSEGIFVSKIVDTGPAAKEGGLQIHD
RIIEVNGKDLSKATHEQAVEAFKTAKEPIVVQVLRRAPRAKAFAPAHDPQLVDVATQTDI
TFEHIMALSKMGSPTPPIPVLDPYLLPEDHPSVHEYYDPNDYMGGIHQEMDRDELELEEV
DLHRVNSQDKLGLTVCYRTDDEDDMGIYVSEIDPNSIAAKDGRLREGDRIIQINGIEVQN
REEAVALLSSEESKNISLLVARPEIQLDEGWMDDDRNDFLDDLHMDMLEEQHHQAMQFTA
SMLQQKKHEEDGGTTDTATILSNQHEKDSGVGRTDDSTRNDESSEQENNGDDHTTSSNTL
GSQKKLTYSHDTLGSGDMQFSNESFISADCTDVDFLGIPVDECERFRELLELKCQVKSAN
PYSLYYHNSTLEMSKSDQESVDRELEMLNEELRNIELECLNIVRAHKMQQLKEQYREPWM
LHNSGFRNYNTSIDVRRHELSDITELPEKSDKDSSSAYNTGESCRSTPLTLEISPDNSLR
RTAEGINCQGNEGTVAYNVSQKNLFAGSESHESSAGKCHASAKDPDLGKQLESKERKGSD
GSKSPTHGQKPSGSYVSPYHHSPYKHAHIPAHAQHYQSYMQLIQQKSAVEYAQSQMSLVS
MCKDLASGQSEPRMEWKVKVRSDGTRYITKRPVRDRLLRERAIKIKEERSGMTTDDDAIS
EMKMGRYWSKEERKQHLVKAKEQRRRREFMMQSRLECLKEQQGAEEKKEMNIIELSHKKM
MKKRNKKIFDNWMTIQELLTHGTKSPDGTRVYNSFLSVTTV
NT seq
3186 nt
NT seq
+upstream
nt +downstream
nt
atggggttcgagctggatcgcttcagcggggacgtggatcccgacttcaagtgtaacctg
tgcaacaaggtgctggaggacccgctgaccaccccgtgcgggcacgtcttctgcgcgggc
tgcgtgctgccctgggtggtgcagcagggcagctgccccgtcaactgccagcgcatctcc
accaaggagctcaaccacgtcctgcccctcaagagcctcatcctcaagctggacatcaag
tgcgacaaccacgcgcggggctgcgaggcggtggtgccgctgcagcacctgggcgagcac
gccgagacctgcgacttctctccggccaagtgccgcaaccgcggctgccgccaggtgctc
aacctgcgcgatgtggaagcgcacatgcgggagcgctgcgaggcgcggcccgcggggctg
tgcgagcagggctgcgggctggtgctgacccacggcgagcgccgggccggcggccacggc
tgcctgcgggcgctgcgcgcacacggggccgcgctgcaggcgcgggcggccgcgctggag
aaggcgctgaagaaggaggcgctgcgcgccggcaagcgggagcagtcgctgctgtcgcga
ctggcggcggcgcagctggagctgcaggtgacggcgctgcgctaccagaagcgcttcacg
cagtacagcgcccgcctggacgcgctggcccgcgcccgcgcagcctcccccggcaagggt
gaagaaacaaaagccctgactctggtcctgcatcgggactctggatctcttggatttaat
attattggtggccggccgtgcgtggacaatcaggatgggtcatcgagcgaaggaattttt
gtatcgaaaatagttgacactgggcctgctgctaaggaaggagggctgcaaatccacgac
aggattattgaggtcaatgggaaggatttatccaaagccacccatgagcaggcggtggaa
gcattcaaaacagccaaggagcccatcgtggtgcaggtgctgaggagggccccgcgcgcc
aaggccttcgccccggcccatgacccgcagctggtggatgtggccacccagaccgacatc
accttcgagcacatcatggccctcagcaagatgggctcgcccaccccacccatccccgtg
ctggacccctacctcttgcctgaagaccatccatccgtgcatgaatactatgacccaaat
gactacatgggaggaattcatcaagaaatggaccgggatgagttggaattagaggaagtg
gatttacatagagtgaacagccaggacaagcttggccttactgtctgttacagaacagat
gatgaagatgacatgggtatttatgtgagtgagattgatcccaacagcatcgctgcgaaa
gacgggcggctccgagaaggggatcgcatcatccagatcaatggcatcgaggtgcagaac
cgagaggaagctgtggcacttctctccagcgaggagagcaagaatatctccttacttgtg
gcaagaccagaaattcagctggatgaaggatggatggatgatgacagaaatgattttctg
gatgacttgcacatggacatgttagaggaacagcaccaccaggcaatgcaatttactgcc
agcatgcttcagcagaagaagcacgaggaagatggaggcaccacagacacagccactatt
ttgtccaaccagcacgagaaggacagtggtgtggggcgcacggatgacagcactcgcaac
gatgagagctctgagcaggagaacaatggggacgatcacaccacctcctccaacactttg
ggcagccagaagaagctgacctacagccatgacaccctgggaagtggggacatgcagttc
agcaatgagtcgttcatctcagctgactgcaccgacgtcgacttcctcggcatccccgtg
gacgagtgcgagcggttccgggagctgctggagctgaagtgccaggtgaagtctgccaac
ccctacagcctgtattaccataacagcaccctggagatgagcaaaagcgaccaagagagt
gttgacagagagctggagatgctcaacgaggagctgcgcaacattgagctggagtgcctg
aacatcgtgagagcccacaaaatgcagcagctgaaggagcagtaccgggagccctggatg
ctgcacaacagcggcttccgaaactacaacacgagcattgatgtccgcaggcacgagctc
tcggacatcaccgagctgcccgagaagtccgacaaggacagctcgagtgcctacaacacg
ggcgagagctgccggagcactccgctcacgctggagatctcccctgacaattccctgcgc
agaactgcagaaggcattaactgtcaaggtaatgaggggacagtggcatataatgtctcc
caaaagaatttgtttgccggctcagaaagccatgaatccagcgctggtaaatgccacgcc
tccgctaaagatcctgacctcggcaagcagctggagagcaaggagagaaaaggcagcgat
ggcagcaaaagccccactcacggtcagaaaccctcgggctcctacgtgtccccataccac
cactctccctataaacacgctcacatccctgcccatgcccagcactaccagagctacatg
cagctgatccagcagaaatccgctgtggaatatgcacagagccagatgagcctggtgagt
atgtgcaaggacttggcctcgggccagagcgagcccaggatggagtggaaagtgaaggtc
aggagcgacgggacacgctacatcaccaagaggccggtgagggacaggctgctgagggaa
cgggccataaagatcaaggaggagcgcagtgggatgaccacggatgacgatgccatcagt
gagatgaagatgggccgttactggagcaaggaggagaggaagcagcacttggtgaaagca
aaggagcagaggaggcggcgggagttcatgatgcagagcaggttagagtgcttaaaggag
cagcaaggtgcagaggagaagaaggagatgaacatcattgaactgagccacaaaaaaatg
atgaagaagagaaataaaaaaatatttgacaattggatgacaatccaagaactgctaacc
catggaacaaaatcaccggacggcacgcgggtgtacaattccttcctgtcagtgactact
gtataa
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integrated database retrieval system
