Corvus cornix (hooded crow): 104683676
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Entry
104683676 CDS
T03546
Symbol
ATG16L1
Name
(RefSeq) autophagy-related protein 16-1 isoform X2
KO
K17890
autophagy-related protein 16-1
Organism
ccw
Corvus cornix (hooded crow)
Pathway
ccw04136
Autophagy - other
ccw04140
Autophagy - animal
ccw04621
NOD-like receptor signaling pathway
Brite
KEGG Orthology (KO) [BR:
ccw00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
104683676 (ATG16L1)
04136 Autophagy - other
104683676 (ATG16L1)
09150 Organismal Systems
09151 Immune system
04621 NOD-like receptor signaling pathway
104683676 (ATG16L1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
ccw04131
]
104683676 (ATG16L1)
03029 Mitochondrial biogenesis [BR:
ccw03029
]
104683676 (ATG16L1)
Membrane trafficking [BR:
ccw04131
]
Autophagy
Autophagosome formation proteins
Atg12 conjugation proteins
104683676 (ATG16L1)
Others
Specific organelles associated proteins
Auto phagosome
104683676 (ATG16L1)
Mitochondrial biogenesis [BR:
ccw03029
]
Mitochondrial quality control factors
Mitophagy factors
Autophagy-related proteins
104683676 (ATG16L1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ATG16
WD40
WD40_Prp19
WD40_WDHD1_1st
WD40_CDC20-Fz
Beta-prop_EML_2
WDR55
EIF3I
Beta-prop_TEP1_2nd
WD40_MABP1-WDR62_2nd
Beta-prop_CAF1B_HIR1
Beta-prop_EML
Beta-prop_WDR75_1st
Beta-prop_SCAP
WD40_MABP1-WDR62_1st
Beta-prop_TEP1_C
Beta-prop_WDR90_POC16_2nd
Beta-prop_DCAF4
WDR90_beta-prop_4th
Beta-prop_RIG_2nd
Beta-prop_EIPR1
Beta-prop_IFT122_1st
ANAPC4_WD40
eIF2A
Beta-prop_IFT140_1st
NBCH_WD40
WD40_RFWD3
Beta-prop_DCAF12
Beta-prop_NWD2_C
Beta-prop_HPS5
Beta-prop_WDR19_1st
Ge1_WD40
Beta-prop_SPT8
INO80F
HTH_6
PALB2_WD40
WD40_like
Lipoprotein_6
Peptidase_M15_4
V_ATPase_I
HEF_HK
CCDC93_CC
WH_CYT4
Motif
Other DBs
NCBI-GeneID:
104683676
NCBI-ProteinID:
XP_010388909
LinkDB
All DBs
Position
9:25368667..25389757
Genome browser
AA seq
623 aa
AA seq
DB search
MASGLRAAGFPPWKRHIAEELRRRDRLQRQAFEEIIAQYNKLLEKSDLHAVLADKLQAEK
YDMQSRHESSPGHDGTWNDAQLQELAQLKIKHQEELTELHKKRGELAQSVIDLNNQMQQK
DKEMQMNEAKIAEYLQKISELETECQELRSKLQDLERANQTLKDEYDALQITFNALEEKL
RKTTEDNQELVSRWMAEKAQEANRLNAENEKDSRRRQARLQKELAEAAKEPLPVEPDDDI
EVLADETSDTAEETSPVPAVSRTSSKRLSQPAGGLLDSISNIFGLSESPLLGHQSSDTAR
RRSVSSFPAPQDNVEPHPGASKEVRVPTTAICVFDAHDGEVNAVQFSPGSRLLATGGMDR
RVKLWEVLGDRCEPKGSLSGSNAGITSIEFDSAGSYLLAASNDFASRIWTVDDNRLRHTL
TGHSGKVLSAKFLLDNARIVSGSHDRTLKLWDLRSKVCIKTVFAGSSCNDIVCTEQCVMS
GHFDKKIRFWDIRTESIVKELELLGRITALDLNPERTELLTCSRDDLLKIIDLRVSAVKQ
TFSAQGFKCGSDWTRVVFSPDGNYVAAGSADGALYVWNVLTGKLERTLAKHHSSSINAVA
WSPAGAHVVSVDKGNKAVLWSEF
NT seq
1872 nt
NT seq
+upstream
nt +downstream
nt
atggcgtcggggctgcgcgccgctgggttccccccctggaagcggcacatcgcggaggag
ctacggcggcgggaccggctgcagcgccaggctttcgaggagatcatcgcccagtataac
aagctgctggagaagtcagaccttcatgcagtgctggctgataagcttcaagcagaaaaa
tatgacatgcagagtagacatgagtccagcccaggacatgatggcacatggaacgatgca
cagctgcaggaactggcccagctgaagataaagcaccaagaggagctgactgagctgcac
aagaaacgtggcgagctggcccagtctgtaattgatctgaacaaccaaatgcagcagaaa
gacaaggagatgcagatgaacgaagccaagattgcagagtatttgcaaaagatttctgaa
ctggaaacagagtgccaggaattgcgtagcaaactgcaagatcttgagcgagctaatcag
acactgaaagatgaatatgatgctctccagatcaccttcaatgccttggaggagaaacta
aggaaaactactgaagacaaccaggagctggtctcacgttggatggcagagaaagcacaa
gaagccaatcgtttgaatgcagaaaatgaaaaggattcaaggagacgccaggccaggctg
cagaaggagctggcagaagctgccaaagagcccttgcctgttgaaccggatgatgatatc
gaagtgcttgcggatgaaacctctgacacagctgaggaaacttctccggtgccagctgtc
agccggacatccagtaagcgactctcccagccagctggaggccttctggactctatcagt
aatatctttggtctgtctgagtctccccttttgggacatcagtcttctgatactgccagg
aggcgttctgtgtcctcattccctgcaccccaggataatgtagagccacatccaggtgcc
agtaaagaagtgagagtgcccactactgccatatgtgtctttgatgcacatgatggggag
gtgaatgcagtgcagttcagccctggctcccggttactagcaacaggaggcatggaccgg
agggttaagctgtgggaagtcttgggagataggtgtgagcccaaaggttccctctctggc
agtaatgctgggattacaagcatagaatttgatagtgctggttcttacctcttagcagct
tcaaatgactttgccagcagaatctggacagttgatgacaatcgattacggcacaccctg
acaggtcacagtggtaaagtcctgtcagccaagttcttgctggacaatgcacgtattgtt
tcgggaagtcacgaccggaccctcaagctctgggacctccgcagcaaagtttgtataaaa
acagtgtttgcaggatctagctgcaatgacattgtgtgtactgagcagtgtgtaatgagt
ggacattttgataagaaaattcgtttctgggacatcaggactgaaagcatagtgaaagaa
ctggagctgcttggaagaatcacagctctggacctgaatccagagcgaacagagcttctg
acctgttcccgtgatgatctactcaagatcatcgatctgcgggtcagtgctgtcaagcag
acgttcagtgcccagggattcaaatgtggctccgactggacgagagttgtgttcagccct
gatggtaactatgtggctgctggctcagctgatggggccctctacgtttggaatgtgctt
actgggaaattggagaggacgcttgcaaagcatcacagttcttctatcaatgcagtcgcg
tggtcgccagcgggtgcccacgtggtcagtgtggacaaaggaaacaaggctgtgctgtgg
tctgagttttga
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