Corvus cornix (hooded crow): 104684055 Help Entry 104684055         CDS       T03546                                  Symbol SPG11 Name (RefSeq) spatacsin   KO K19026   spatacsin Organism ccw  Corvus cornix (hooded crow) Pathway ccw04142   Lysosome Brite KEGG Orthology (KO) [BR:ccw00001]  09140 Cellular Processes   09141 Transport and catabolism    04142 Lysosome     104684055 (SPG11)  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03400 DNA repair and recombination proteins [BR:ccw03400]     104684055 (SPG11) DNA repair and recombination proteins [BR:ccw03400]  Eukaryotic type   DSBR (double strand breaks repair)    HR (homologous recombination)     Other HR factors      104684055 (SPG11) BRITE hierarchy SSDB OrthologParalogGFIT Motif Pfam:  Spatacsin_C Motif Other DBs NCBI-GeneID:  104684055 NCBI-ProteinID:  XP_039413446 LinkDB All DBs Position 10:12400767..12428967 Genome browser AA seq 2424 aa AA seqDB search MAAAAEAGVPVRRELRVLLVPRSGEPRGCPRDAARVRLSRAQDALGTLLVPGGIYLESLS PGGAGRARGSVLPGAWADFMWDSTEDDGLQSNKTKLLALGQGHELFVYEFSVEDGKHNPN SLHSCKEETLKKLLEAKNMNLPSVFSVKILSFGNKKCKLLLNQFILVHLTFPGKDSSPET CDCFTLALPPEAVGRITDSQFCRGILFLLDSAGWIYIFDCSDGAILGKVSVALGAGQGEG SAPVSPLAALAVSPDLSMAVVTNTSHGALAVQLNTYFRQFPEHLLCKRDPENLPVKPPEG LDEDDLASSDHSMELLSSPFRTDRSWKAHLSSLWDRVRRRRTPGSPDLVNDLNLPWYQFF THLEGHDPELCEDPEKMVAFVPRAATWAASRVLQSQGAACGAAGQQWTQIPVGAPQQVVK LECKLVTGAKAVFVVLAQDTGLSLVLWDFESQDVTCSQFGRSSAYVECSAEVPLCLLLTE RGLSLVLFGLTQEEFLTRLMMFGSAGVVDSVCHLNGWERCSIPIHALEAGLENRQLDTVD LFLKSKESVFSLPAPCPGPEHSGDGASQSYLRNLEELRPALNLLCSAIQDNDMEPHSKHF SEQLLTLTLTFLTKQLEEIFVHTEEPDEFLQKAADILTDYIIKLRKFLRKYPRPPVTPGH VGADMDEDLPEIEESHEWEKLTPEEVIAEAILSNKIPEAQIFFRRHQHPAESLQEFIQIG LNLVYDCLLKGNTRQASELLRNMGFNVKEELHKICFHTEDKHVRDLLVKVLREENYFSEK EKKMIDFVHQVESFYSESFQENKETESLSSFSSWRREQDLSRHQAVLGLELGRAGPGAHS GRLRVMFNWAHWWDELVQEMIVLPRKPRQELKTCSPEVLWMHLTAEHDWFSICSWIEESE PSQAPCSQAAWPPLSPDIVDRNTLCSTYMRQDILNKLARKGIFVRSELEDFELLLQRVLC LGGVLQNPHPVPKYSTASGLDFHAQFVLHCLEHSLQYLLYTYLDYYSLTPSNCPILNNKV LHEAHPWFEFLVQCRGVASNPRDPKMIFQASLANAQILIPSSQGGVSSILLEGRTLLALA TTVYGPGGIDQVLQNEDTEKPLKKVDPQLLKMALTPYPKLKAALFPSCTAHGILPPDISL YHLLQSLMPFDPTKLFGWQSTNTLAVSDAWSELPHFSWPELVSRHAVVERLDFLYYLLHG RPAFAFGTFLVQQLVKSKTPRQLIQQAGQEAQVLALSSFSVPSVAAACVCFLELLGLDSL RLRVDVRVAKMIFSHRTRNEASHHNQIRDALVEKLTKLADGEKAAAAAILTSLEEAFWDA IEHQGIKRTSSDSRRQWSLVMQFCKLHNLELSTSFLRECAKSNEWLQFLIQTQLYSHQPA QVIPLLQDFPPVVQDHLVLALGKFLCPERGAAGRAWGGRAGSLFQILLQCQENPSPSCFL LAEGLREHAPILSVLAACCPDANLISCLCVWIITSVDDATRAEATTHTQSWAESPQWDLQ DLAVIWKVFLRKQKSKTLLNGFQLFLKGSPLLHILEMYELCMNCKKYNEARTKLDEFQES LAKLRAAGGAAATELPVPWLESQALFILELMLQQCRTEYELGKLLQLFAAAENLLLDGPY VKKLCALSEALKDSSIPINRSILTSYSLEAFQGECRSILEQLQEKGMFSLAREVAALAEL PVDSVVTHEVLRDLHHLRDTGQWHQTQTRAEFWKKCNDTFTKHSICSRAAAGFFLDQANH VWESSGQEKTTSIMERQLLLTLAGHWLAKDTEVAVQELEEVEKQIWLCRIAQRVLAAEAW GQCPCPGPTGLGRDLSFASLAQQFSFAKLPALNTARHCRLEALAPGEPRQALGDAEQAAL GTLVGALLDEGSVHEATRVCHYFHLCHRDVSLVLHCRALASGEAGLEQLQPEVRALLAAG AGTPEGSAASSRAPGTSSLEDWTPLGALCEDDPVVAALKALAEECVHGRGYCRQVLCLYE LSKELSCSFGEVSARDPREVLGAILSRRGPERGHRAQAFIACQGLPPAAVAQLLAQQITQ ELLASAQGKGQKQVWNPAVESQAFLQLAKLCQDHTLVGMKLLDKISSVPCGELSCITELL ILAHNCFSLTCHMEGITRVLQAARLLTEEHLAPKEEYGLVVRLLTGIGRYNEMTYIFELL HQKHYFEVLMRKKLDPSGTLKAALLDYTKRCRPGDSEKHNMIALCFSMCREIGQNHEAAA STQLKLIECRPWEESLQDVANLKKLLLKALTLFIDAAESYSKDSCVRQALRCRRLMRLIT LQLHFLGSGQSTRIINLGRQDLPGAILALPRFYQAAIVAEAYEFLPDWAEVLFQQVITRG DFVYLEEFKQQRPLWPGLFEEVAKKVKQHPPADAALRNLKRFLTHCEDIYTHYKLAYDHK FYDVVNSLLKDPQTGCCLNDLLSN NT seq 7275 nt NT seq  +upstreamnt  +downstreamnt atggcggcagcggcggaggccggggtcccggtccggcgggagctgcgtgtgctcctggtg ccccgctcgggggagccgcggggatgcccgcgggacgcggcgcgggtgcggctgagcaga gcccaggacgctctgggcaccctcctggtccccggcgggatctacctggagtcgctgtcg ccgggcggggccggccgggcccggggcagcgtcctgccgggagcctgggctgacttcatg tgggacagcacagaagatgatggtttgcaatcaaacaagacaaaactcctggctcttggt caaggtcatgaactgtttgtctatgaattcagtgtagaagatggaaaacacaacccaaat tccctgcacagttgtaaggaagagacgcttaaaaagcttcttgaagctaaaaacatgaac ctgccttcagttttctctgtgaagattttgtcttttggaaacaagaagtgcaaacttctg ctcaaccagtttatccttgtgcacctgacctttcctgggaaagactcatccccagagacc tgtgactgcttcaccctggctctgcctccagaagctgtggggagaataacagattcccag ttctgcaggggcatcctgttcctgttggacagtgctggctggatttacatattcgactgc tctgatggtgccatcttagggaaggtcagtgtagccctgggagctgggcagggggagggc tcagcccccgtgtcccccctggctgccctggcagtgtcccctgacctcagcatggccgtg gtgaccaacacctcccacggtgctctcgctgtgcagctcaacacctacttcagacagttc cctgaacatttgctctgtaagagagatcctgaaaatcttccagtgaagcctcctgaggga ctggatgaggatgacctggccagttctgaccacagcatggagctcttgtcgtcgcctttc cgcacagacaggtcctggaaggcacacttatcctcactgtgggacagagtaaggagaaga aggacaccaggttctccagatttggtgaacgacttgaatttgccttggtatcagtttttt acccatcttgaaggtcacgatcctgagctttgtgaggatccagagaagatggtggccttt gttccccgggctgctacgtgggcggcttcccgagtgctccaaagccagggtgcagcctgt ggggctgcaggacagcagtggacacaaatccccgtgggagcacctcagcaagtggtgaaa ctggagtgtaagctggtgactggagctaaagctgtgttcgtggtgctggcacaggacacg gggctgtcgctggtgctctgggattttgagtcccaggatgtgacgtgttcccagttcggc agaagcagtgcttatgtggagtgcagtgcagaggtgccgctgtgtctgctgctgacagag cgtggtctgtccctggtcctgtttggtttaactcaagaggagtttctgaccaggctgatg atgttcggcagcgccggagttgtggattccgtgtgtcacctcaatgggtgggagaggtgc tccattcccatccatgccctcgaggcaggtttggaaaatcgccagctggacacagtggac ttgtttttaaaaagcaaagaaagtgttttcagtctccctgcaccctgccctgggcctgag cactctggggatggtgcctcccagtcttacctgagaaatttggaggagctcaggccagct ttaaacttgctctgctcagcaatccaagacaatgatatggagcctcacagcaaacacttc tctgagcagctcctgaccctcacactgactttccttaccaagcagctggaggaaatcttt gtgcacacagaggaacctgatgaattcctgcagaaggctgcagatattttaactgactac attattaaactgagaaaattcctgaggaaatatcctcgaccaccagtaactccagggcac gtgggagctgacatggacgaagacctgcctgagatagaagagagccacgagtgggaaaaa ctgacaccagaggaagtcattgctgaggccatcctaagcaataaaataccagaggcccag atcttcttccgaaggcaccaacatcctgctgagagtctccaggaattcatccagataggt ttgaacctggtctatgactgtctgctgaagggcaacaccaggcaggcctccgagctgctg agaaatatgggcttcaatgtgaaggaggaactgcacaagatctgctttcacacagaggac aaacacgtacgggatctcttggtgaaagtgttacgagaagaaaattatttttctgaaaaa gagaagaaaatgatagattttgtgcatcaggttgaaagcttttactcggaatccttccag gaaaataaagagactgagtctctttccagtttcagcagctggagaagggagcaggacctt tcccgacaccaggcagtgctgggcttggagctgggccgggccgggcccggggctcacagc gggaggctcagggtgatgtttaactgggctcactggtgggatgagctggtgcaggagatg attgtgctgcccaggaaaccacgccaagaactcaagacctgcagtcctgaggttctttgg atgcacttgacggccgagcatgattggtttagtatttgttcctggattgaggagtcagag cccagccaggctccctgcagccaagctgcctggccccccctgagccctgacatcgttgac aggaacacactgtgcagcacctacatgagacaggacatcctgaacaagctggccagaaag ggaatttttgttcgttctgagctggaggatttcgagctcctgctccagagggtgttgtgc ctcgggggagtcctgcagaatcctcaccctgttccaaaatacagcactgccagtggcctg gacttccatgctcagtttgtcctccactgcctagagcacagcctgcagtacctgctgtac acttacctggactattacagtttaaccccttcaaactgccctattctgaataacaaggtg ttgcacgaagcacatccctggtttgagttccttgtgcagtgtcgaggggttgccagcaat ccccgagatcccaagatgattttccaggcgagtctggccaatgctcagatcctgattccc agcagccaggggggtgtgagcagcatcctgctggagggcaggaccctgctggccctggcc accacggtgtatggccctgggggcatcgaccaggtccttcagaatgaagatacagaaaaa cctctaaagaaagttgatccacagctcttaaaaatggccttgaccccttaccccaagctc aaggctgctctctttccctcctgcactgctcatggaattttgcctcctgacatctctctc taccatcttcttcagtcattaatgccctttgatcccacgaaattatttggctggcagtca acaaacactcttgctgtgtcagatgcctggagtgagctccctcacttctcgtggcccgag ctggtgagcaggcacgccgtggtggagaggctggatttcctgtactacctgctgcacggc cgccccgccttcgccttcgggaccttcctggtccagcagctggtgaagagcaaaaccccc aggcagctgatccagcaggcaggacaggaggcccaggttttagctctgtcctccttcagt gtcccctcagtggcagcagcctgtgtgtgtttcctggagctgctgggcctcgacagcctc cggctccgcgtggatgtgagagtcgcaaagatgattttcagtcacaggacgaggaatgag gcctctcatcacaaccagatcagagacgctttggttgagaagttaacaaagttggctgac ggtgagaaggcagcagcagcagcaattcttacctccttggaagaagccttctgggatgca attgagcaccaaggaataaagaggacgtccagtgactccagaaggcagtggtccttggtc atgcagttctgcaaactccataacctcgagctgagcacatccttcctgagggaatgtgcc aaatccaatgagtggctgcagttcctcatccagacccagctctacagccaccagccagcc caggtcattcccctcctgcaggatttccctcctgtggtacaggatcacctcgtgctggca ctggggaagttcctgtgtcctgagcgcggtgctgccggcagggcctggggcggccgtgcg gggagtctgttccagatcctgctgcagtgccaggagaatcccagcccctcctgcttcctc ctggctgaaggactcagggaacacgcccccatcctcagtgtgctggcagcctgctgccct gatgcaaacctcatttcctgcctctgtgtttggatcattacctctgtggatgatgccacc agggctgaggcaaccacccacacccagagctgggcagagagcccccagtgggacctgcag gacctcgccgttatctggaaagtcttcttgaggaagcaaaaaagtaaaacacttctaaat ggcttccagctgtttttaaagggttcccctttgctgcacatcctggagatgtatgaactg tgtatgaactgtaaaaagtacaacgaggctagaacgaaactggatgaatttcaggaaagc cttgcaaaactgagagctgcaggaggagcagcagccaccgagctgccggtgccgtggttg gaatcgcaggcgttgttcatcctggagctgatgctgcagcagtgccggacagaatatgag ctgggaaagctcctgcagctctttgctgcagcagagaacctcctgctggatggcccttat gtgaagaaactctgtgccctcagtgaggccctgaaggactcctccataccaatcaatcgc tccatcctgacctcctacagcctggaggccttccagggggagtgcaggtccattctggag cagctgcaggagaagggaatgttcagcctggctcgggaggtggcggcactggctgagctg cctgtggacagtgttgtcacacacgaggttctgagagatctacatcatttaagagacact ggacagtggcatcaaacccagacaagagctgagttctggaaaaagtgcaatgacaccttc actaaacattccatctgcagccgagctgcagcagggttcttcctcgatcaggccaaccat gtttgggaatcctcagggcaggagaagacaaccagcattatggagagacagctgctgctc accctggctgggcactggctggccaaggacaccgaggtggccgtgcaggagctggaggag gtggagaagcagatctggctgtgccgcatcgctcagcgagtgctggcagccgaggcctgg gggcagtgcccgtgtcccggccccaccgggctgggcagggacctgtcctttgccagcctg gcccagcagttctcctttgccaagctgccagccctgaacacggccaggcactgcaggctg gaggctctggctcccggggagccccggcaggcgctgggggacgcagagcaggcggcgctg gggacgctggtgggggccctgctggacgagggcagcgtgcacgaggccacccgggtgtgc cactacttccacctgtgccacagggacgtgtccctggtgctgcactgcagagccctggcc tccggggaggctgggctggagcagctgcagcccgaggtgcgggccctgctggcagccgga gcggggacgcctgagggcagcgcggcctcgagcagagcccctggcacatccagcctggag gactggacccctctgggggctctgtgtgaggatgatccggtggtggcggcgctgaaggct ctggcagaggaatgtgtccatggcaggggctactgcaggcaggtcctgtgcctctacgag ctctccaaggaactgagctgctccttcggggaggtgtcggcccgggacccgcgggaggtg ctcggggccatcctgagccgccgggggccggagcggggccacagggcccaggccttcatc gcctgccaggggctgccacccgccgccgtggcccagctgctggcccagcagatcacgcag gagctgctggcctctgctcagggaaaaggacagaagcaggtttggaaccctgcagtggag agccaggcatttctgcagcttgccaagctgtgccaggatcacaccttggttgggatgaag ctactggataaaatctcctctgtcccctgtggggagctgtcatgcattacagagctgctg atcctggcccacaactgcttcagcctgacgtgccacatggaagggatcacacgagtgctc caggcagctcggctgctcaccgaggagcacctggctcccaaggaagagtatgggctggtg gtgcgcctgctcacgggcattggcaggtacaatgagatgacctacatctttgagctgctg caccagaagcactacttcgaggtgctcatgaggaagaaactggacccgagcgggacgctg aaggcggcgctgctggactacaccaagcgctgccggcccggggacagcgagaagcacaac atgatcgcgctgtgcttcagcatgtgccgggagatcggccagaaccacgaggctgctgcc tccacccagctcaaactcatcgagtgccggccctgggaggagtctcttcaggatgttgca aatttaaagaagttgctgctgaaagctctgactctcttcatcgatgcagcagaaagttac tccaaggactcgtgtgtgcggcaggcgctgcgctgccgccgcctgatgcggctcatcacg ctccagctgcacttcctgggctcagggcagagcacgaggatcatcaacctgggcaggcaa gacctgccaggtgccatcctggccttgcccaggttctaccaggcagccatcgtggcagag gcctacgagttcctgccggactgggctgaagttctgttccagcaggtgatcaccaggggg gactttgtgtacctggaggagttcaagcagcagcggccactgtggcccggcctgttcgag gaggtggccaagaaggtcaaacaacacccccctgctgatgctgccctgaggaacctgaag cggttcctcactcactgtgaggatatctacacccactacaagctggcctatgaccacaag ttctatgatgtggtgaactccctgctgaaggaccctcagactggctgctgcctcaacgac ctcttatccaactga

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