Corvus cornix (hooded crow): 104684137
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Entry
104684137 CDS
T03546
Symbol
PATL1
Name
(RefSeq) LOW QUALITY PROTEIN: protein PAT1 homolog 1
KO
K12617
DNA topoisomerase 2-associated protein PAT1
Organism
ccw
Corvus cornix (hooded crow)
Pathway
ccw03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ccw00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
104684137 (PATL1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ccw03019
]
104684137 (PATL1)
Messenger RNA biogenesis [BR:
ccw03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
104684137 (PATL1)
mRNA degradation factors
5'-3' decay
Decapping complex
104684137 (PATL1)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PAT1
Motif
Other DBs
NCBI-GeneID:
104684137
NCBI-ProteinID:
XP_039408770
LinkDB
All DBs
Position
5
Genome browser
AA seq
763 aa
AA seq
DB search
MFRYPSLEDCPLDEDEDAFQALGEEDEDIDQFNDDTFGAGAVDDDWQEAHERLAELEDKA
GSSRDPDGPVGNDGDVLGDPEDALAERLTRLVIDSELEDPAIMQAVHTRDPPQPGGLNSS
IWDSSAVLRRIRGPLLAQEMPSVSVLDYALPQRPPQARDEERDPSERALPRRSSSPVIGS
PPVRAVPIGTPPKQAAIPNFNQQILCPKPVHIRATMQQRYPAPYGERMSPNQLCNVPNSS
LLGHPFPHSVSPVLTHLQRAQLLGGAQAGRMSPSQFARVSGLVGSPLPSVNPKLLQGRVG
QMMSPAGGFRAFFGAPPAPPPSQLPHPQGPGSHLQNLRPQPQMFRPDTTHLHPQHRRLLH
QRQQQNRNQHRSLNGSGGDRGGHRSSHQEQIRKDPYANLMLQREKDWVSKIQMMQLQSTD
PYLDDYYYQNYFQKLEKLAAAEEVHGDGPKKERTKLITPQVAKLEHTYKPVQFEGSLGKL
TVSSVNNPRKMIDAVVTSRSEDDETKEKQVRDKRRQTLVTIEKTYSLLLDVEDYERRYLL
SLEGERPALMGERKQKICDMYDNLRGKAPGQDRLSDDHFMQIMCIRKGKRLVARILPFLA
PEQAADVLMATARNLPFLIKKDAQDEVLPCLLRPFSHVLYHLPLGTVTSLVQQLTNLPQS
AAAPTNLHLTAVLQNKFGLSLLYLVLSRGEELQSSDTNTELMQDNQWTELMLMATRELLR
IPQGALAKPVSIPSNLISLFSRYVDQQKLNLLETKLHLVHGIR
NT seq
2292 nt
NT seq
+upstream
nt +downstream
nt
atgttccggtacccgtccctggaggactgcccgctggacgaggatgaagacgccttccag
gccctgggggaggaggatgaagacatcgaccagttcaacgatgacaccttcggcgctggg
gccgtcgatgacgactggcaggaggcccatgagcggctggcggagctggaggacaaggcc
gggtcgagccgggacccggacggtcccgttgggaatgacggggacgttctgggcgatccc
gaggacgcgctggccgagcggctgacgcggctcgtcatcgacagcgagctggaggacccg
gccatcatgcaggccgtgcacaccagggatcccccgcagcctggagggctgaattccagc
atctgggacagctcggccgtgctgcggcgcatccggggaccgctcctcgctcaggagatg
ccgtcggtgtccgtgctggattacgccctgccccagaggcctccgcaggctcgggatgag
gagcgggatccgtcggagcgggcgctgccccggcgctcctcgtcccccgtcatcgggagc
cccccggtccgggccgttcccatcggcaccccccccaaacaggctgccatcccaaacttc
aaccagcagatcctgtgtcccaagcctgtccacatccgagctaccatgcagcagcgttat
cccgctccctatggagagaggatgtcccccaaccagctctgcaatgttccgaattcctcc
ctcctgggccacccgttcccccacagcgtctctcccgtcctcacacacctgcagagagcc
cagctgctcggaggagcccaggccggccgaatgtcccccagccagtttgcccgggtgtcc
gggctggtggggagcccgctgccctccgtgaatcccaagctgctccagggcagagttggg
cagatgatgtccccggccggagggttccgtgcctttttcggggctccccccgccccgccc
ccctcgcagctgccgcaccctcagggccccggatcccacctgcagaacctgaggccgcag
ccccagatgtttcggccggacacgacgcatttgcacccccagcaccgccggctcctgcac
cagcggcagcagcagaaccggaaccagcaccggagcctcaacggctccgggggggaccga
gggggccaccggagcagccatcaggagcagatccgtaaggatccctacgccaacctcatg
ctgcagcgggaaaaggactgggtgtccaagatccagatgatgcagctgcagagcactgac
ccctacctggatgattattattaccagaactacttccagaagctggagaagttggcagca
gccgaggaagtgcacggtgacggtcccaagaaggagcgcactaaactcatcacccctcag
gtggccaagctggagcacacctacaagccagtgcagtttgagggctcgctgggaaaactc
accgtctccagcgtcaacaacccccggaagatgatcgacgccgtggtgacgtcccgcagc
gaggatgacgagacgaaggagaagcaagtccgggataagaggcggcagaccctcgtcacg
atcgagaagacgtacagcctcctcctggacgtggaggactacgagcgccgctacctcctg
agcctggaaggggagcggccagccctgatgggagagaggaagcagaagatctgtgacatg
tatgacaatctgagggggaaggcgcctgggcaggacaggctgagcgatgaccacttcatg
cagatcatgtgcatccggaaaggaaaacgcctggtggcccggatccttcccttcctggct
ccggagcaagcggccgacgtgctcatggccacggccaggaacctgcccttcctcatcaag
aaggatgctcaggatgaggtgcttccctgcctcttgaggcccttttcccacgtcctctac
caccttcccttgggaacagtcaccagccttgtgcagcagctcacaaacctacctcagagc
gccgccgctcccaccaacctgcacctcactgctgtgctccaaaacaagttcggtctgtcc
ctgctgtacctggtcctgagccgaggggaggaattgcagagctcggacacaaacacggag
ctgatgcaggacaaccaatggacggagctgatgctgatggcgacccgggagctcctgcgg
atccctcagggagccttggcaaagcccgtgtccatcccctccaacttgatctccctcttc
tctcgctacgtcgaccagcagaagctgaacctgctggagacgaaattgcacttagtgcac
gggatccggtag
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