Corvus cornix (hooded crow): 104684307
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Entry
104684307 CDS
T03546
Symbol
TAF5L
Name
(RefSeq) TAF5-like RNA polymerase II p300/CBP-associated factor-associated factor 65 kDa subunit 5L
KO
K03130
transcription initiation factor TFIID subunit 5
Organism
ccw
Corvus cornix (hooded crow)
Pathway
ccw03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
ccw00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
104684307 (TAF5L)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ccw03021
]
104684307 (TAF5L)
03036 Chromosome and associated proteins [BR:
ccw03036
]
104684307 (TAF5L)
Transcription machinery [BR:
ccw03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
104684307 (TAF5L)
Coactivators
SAGA/TFTC/STAGA complex
104684307 (TAF5L)
Chromosome and associated proteins [BR:
ccw03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
PCAF complex
104684307 (TAF5L)
STAGA complex
104684307 (TAF5L)
TFTC complex
104684307 (TAF5L)
SAGA complex
104684307 (TAF5L)
SLIK complex
104684307 (TAF5L)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
Beta-prop_CAF1B_HIR1
WD40_WDHD1_1st
WD40_CDC20-Fz
Beta-prop_EML_2
WD40_MABP1-WDR62_2nd
Beta-prop_TEP1_2nd
TFIID_NTD2
EIF3I
WDR55
Beta-prop_WDR90_POC16_2nd
Beta-prop_EML
Beta-prop_TEP1_C
WD40_MABP1-WDR62_1st
Beta-prop_WDR75_1st
Beta-prop_SCAP
ANAPC4_WD40
Beta-prop_IFT122_1st
WDR90_beta-prop_4th
Beta-prop_RIG_2nd
Beta-prop_IFT140_1st
NBCH_WD40
Beta-prop_SPT8
Beta-prop_HPS5
Beta-prop_DCAF4
Beta-prop_Vps41
Beta-prop_EIPR1
Beta-prop_WDR19_1st
WD40_RFWD3
PEP5_VPS11_N
PROPPIN
WD_LRWD1
Ge1_WD40
eIF2A
Nbas_N
Motif
Other DBs
NCBI-GeneID:
104684307
NCBI-ProteinID:
XP_039424816
LinkDB
All DBs
Position
3:42397207..42415957
Genome browser
AA seq
589 aa
AA seq
DB search
MKRVRTEQIQMAVSCYLKRRQYVDSEGPLKQGLRLCQTAEEMAANLTVQSESGCANVVSA
APCLAEPQQYEVQFGRLRNFLTDSDSQHSHEVMPLLYPLFVYLHLNMVQNGLKSTVDSFY
SRFHGMFLQNASQKDIIEQLQTTMTIQDILSNLKLRAFLDNKYVIRLQEDSYNYLLRYLQ
SDNNNALCKVLTLHIHLDVQPAKRTDYQLYAGGSSSRNESNGLEPSDMPASILQNEAALD
LLQDSIKRVKDGPPSLTTICFYAFYNTEQLLNTAEISPNSKLLAAGFDNSCVKLWSLRSR
KLKSEPHLVDVSRIRLACDILDEEEEEDDNAGTEMKILRGHCGPVYSTRFLSDSSGLLSC
SEDMSIRYWDLGSFTNTVLYQGHAYPVWDLDISPCSLYFASGSHDRTARLWSFDRTYPLR
IYAGHLADVDCVKFHPNSNYLATGSTDKTVRLWSTQQGNSVRLFTGHRGPVLALAFSPNG
KYLASAGEDQRLKLWDLASGTLYKELRGHTDNITSLTFSPDSSLIASASMDNSVRVWDIR
NTYCNAPADGSSSELVGVYTGQMNNVLSVQFMACNLLLVTGIAQENQEH
NT seq
1770 nt
NT seq
+upstream
nt +downstream
nt
atgaaacgcgtacgcacagaacagattcagatggcagtgtcctgctacctcaagcgccgt
cagtatgtggactcggaaggtcccctaaaacaagggctgaggctgtgtcagactgctgaa
gagatggcagctaatctcacagtccaatctgagtctggttgtgccaacgttgtgtctgca
gctccctgcctggcagagccacagcaatatgaagtacagtttggacgattacgcaatttt
ctgacagattcagattctcagcacagccatgaagtgatgcctcttctatatcccctcttc
gtctacctccatctgaacatggtccagaatggcctaaaaagcacagtggacagtttttac
agccgcttccatggcatgttcttgcagaatgccagccagaaggatatcattgaacagttg
cagactaccatgactattcaagatatcctgtccaacttgaagctccgggcttttctggac
aacaagtacgtcattcgccttcaagaggacagctacaactaccttcttcgctacctccaa
agtgacaacaacaacgccctgtgcaaagtcctgaccttgcacattcacctggatgtgcag
cctgccaagaggactgactaccagctctatgctggtgggagctcttcacgcaacgagagc
aatggcctggagcccagcgacatgccggcttccattctgcagaatgaggcagcgctggat
ttactgcaggacagcattaaacgtgtcaaggacgggcccccttccttaaccaccatctgt
ttctatgccttctataacacggagcagttgctgaacactgcagagatttcaccaaatagc
aagctgctcgctgctgggttcgataattcatgtgtgaagctgtggagcctgcgctccagg
aaattgaaatctgagccccaccttgttgatgtgtcccgcatccgtttggcttgtgacatc
ctggatgaggaggaggaagaggatgacaatgcaggcacagaaatgaagatcctgagagga
cactgtggacctgtgtatagcacgaggtttctttcagacagttcaggactcttatcttgt
tctgaggacatgtccatcagatactgggacctcggaagttttacaaacactgtgttgtac
caaggacatgcctatcctgtctgggatttggatattagcccctgcagcctgtattttgcc
agcggttcccacgatcgcactgcaaggctctggtcgtttgatcggacgtacccgctgcga
atatatgcaggccatttggcagacgtggactgtgtcaagttccaccccaattccaactac
ttagcaacgggctccacagacaaaaccgtgcgcctgtggagcactcagcagggcaactcc
gtgcggcttttcaccggccaccggggccctgtgctggcgctcgcattttctcccaacggg
aagtacctggcatcggcaggtgaagaccagcggctgaagctgtgggacttggcatcagga
actctttacaaagaactgagggggcacacggacaacataaccagccttacttttagccct
gacagtagtttaattgcttcagcgtcaatggacaattcagttcgggtctgggacattcgg
aacacttactgcaacgcccctgcggatgggtcttccagtgaactggttggtgtatatacc
ggacagatgaataatgtactgagcgtacagtttatggcctgtaatcttcttctagtgact
ggaattgcacaagaaaatcaggaacattaa
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