Corvus cornix (hooded crow): 104684638
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Entry
104684638 CDS
T03546
Symbol
IFT140
Name
(RefSeq) intraflagellar transport protein 140 homolog isoform X1
KO
K19672
intraflagellar transport protein 140
Organism
ccw
Corvus cornix (hooded crow)
Brite
KEGG Orthology (KO) [BR:
ccw00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
03037 Cilium and associated proteins [BR:
ccw03037
]
104684638 (IFT140)
Cilium and associated proteins [BR:
ccw03037
]
Primary cilia and associated proteins
Intraflagellar transport (IFT) complex A
104684638 (IFT140)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_IF140-IFT172
Beta-prop_IFT140_1st
Beta-prop_IFT140_2nd
TPR_IF140_C
WD40_CDC20-Fz
Beta-prop_EML_2
WD40_WDHD1_1st
Beta-prop_WDR19_1st
Beta-prop_RIG_2nd
ANAPC4_WD40
Beta-prop_EML
WD40_Prp19
TPR_IFT80_172
WDR55
Beta-prop_HPS5
Beta-prop_CAF1B_HIR1
Beta-prop_WDR90_POC16_2nd
TPR_GEMI5
TPR_COPA_B
Beta-prop_WDR75_1st
WD40
Clathrin
Rax2
WD40_MABP1-WDR62_1st
TPR_2
SNAP
Motif
Other DBs
NCBI-GeneID:
104684638
NCBI-ProteinID:
XP_019137115
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All DBs
Position
14:complement(16209764..16315962)
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AA seq
1463 aa
AA seq
DB search
MAVYVDHRTDAPDSVASPSHIAWHPLHPLLAVASISTAAGGCVDIYLEQGEHVPDSHVER
SFQVTLLAWHPSRPILASGWETGEVLILNKQDKEQHTVPPNHSAKITVLSWSTSGTCLVS
GDGHGVLFLWKMDHRGRVQGPALVKQEYGKCLCHCVFRPPPPGEDFVQLAKAAVSGDEKA
LDMFNWKKAGMGPHLKTAVQEGLSFFITMTDGSVHYVNEKGKTRHVLSTESLVRKLLLLE
ERDVLLVITENLQLSLHAVSPTGEAEELMKVKLSGKTGHSADIILIDHSLVVTALGETVI
RFWDLDRDENYVLSLDVQFGFEGGECINCVSYCSAKGLLAAGTSKGRVAMWNKATGSDQS
TWALEGNKWKFQASTELEGNVTQIKWGSRKNLLAVNNISSVVILSEQAMLAHFHQQVAVV
QVSPNLFNVTTFSAGTTHSLRVDMNANGVFATKDAVVFWNGKQVAVFECSGDTFRSAGSF
LCDSPVLSVHGENLYTVEPYQIQVRTWQGTVKQLLVFSEAEGNPCLLDVCGNFLAVGTDL
AHLKIFDLSRREAKVHCNSKSLSKLLPGCGDIASVKCNANGSKVSILVSRADGNIDSKIC
FYDVEMDKVMLFDFKAEQGDGRDNLSAGQGIGKSVVEYPELHSHIPACHFWDQSEPRLFV
CEAIPETGLQPPDQKKNQTEGTMDVWIISFFSTEEHGLLLQDSFPLPSSYQVLLGIEVPH
YYFAKKLCFRRGCVYKPLGEAEKGASESGSGTVSQMVARRPMRDFIGLGDCDKTTLDAML
NFSYYLTAGDMDEAFKSIKLIKSEAVWENMARMCVKTQRLDVAKICLGHMGHARGAKALR
EAEQEPEQKARVAVLAIQLGMLEDAEQLYKACKRYDLLNKFYQASNQWQKAIETAEAHDR
VHLRTTHYNYAKHLEATGQQSLALTHYEKSDTHRFEVPRMLSEDLQALENYVNKMKDKSL
WKWWAQYLESQSDMESALKYYALAQDYFSLVRVHCFQGNIQKAAEIANETGNGAASYHLA
RQYESQEDIKQAVHFYSRAQAFNNAIRLCKANNLDDQLMNLALLSSPEDMIEAACYYEEK
GDQMDRAVMLYHKAGHFSKALELAFATQQFGALQLIAEDLDEKSDPALLARCSGFFIEHA
QYEKAMELLLTAKKYHEALQLCLEQNLTITEELAEKMTVSKESQDLSEESRRELLEQIAD
CCMRQGNYHMATKKYTQAGNKLKAMRALLKSGDTEKIIFFAGVSRQKEIYIMAANYLQSL
DWRKDAKIIANIISFYTKGGALDLLAGFYDACAQVEIDEYQNYEKAHRALTEAYKCLSKA
KARSPVEQESKLGHLQSRMSLMKRFIHAQRVYPEDTEEAVRQCELLLAEQDFDDAIRHGD
VLGFLVQHYAQVEEFHTAYRYLEEMQKRIPASNLSYYVSPQTMEAVHRGAGIPMSRALAP
EHTGHGSMDNREEEEVADEVEDP
NT seq
4392 nt
NT seq
+upstream
nt +downstream
nt
atggctgtgtatgtggatcatcgaacagatgctcctgattccgttgcctccccttcccat
atagcatggcacccacttcatccactcctggcagttgcttctatcagcacagcagctggg
ggctgtgtggatatctacctggaacagggagaacatgtgcctgattcccatgttgagaga
agctttcaggtcacattacttgcctggcacccttccagacccattctggcatcaggatgg
gagacaggagaagttctgatactgaacaaacaagacaaggagcagcacactgtaccccca
aatcacagcgccaaaatcacagtcctgagctggagtacaagtggtacctgcctcgtgtct
ggggatgggcacggtgtcttgtttctgtggaaaatggaccatcgaggcagagtccagggt
cctgccctggttaagcaggagtatgggaaatgcttgtgtcactgtgtctttcggccaccc
cctccgggcgaggactttgtgcaactggcaaaagcggctgtgagtggtgatgagaaagcc
ttggatatgtttaactggaagaaagctggaatgggaccacatctgaaaacagcagtccag
gaaggactctccttctttatcactatgacagatggttctgtgcactatgtgaatgagaaa
gggaagacaaggcacgtattgtccacagagagtctggttcgaaagctcctgttgctagag
gaaagagatgttttacttgtaataacagagaatctgcagttgtccttacatgcagtttct
cccactggagaggcagaagagcttatgaaggtgaagttgagtgggaagactggtcattct
gcagacattattttaatagaccatagcctggttgttacagcactaggtgagacagtcatc
aggttctgggatttggatcgagatgagaactatgtgctctccctagatgtgcaatttggc
tttgaggggggagaatgtattaactgtgtgtcttactgcagtgctaaaggtctcttggca
gctggaactagcaaagggagagtagcaatgtggaacaaagcaacaggatctgatcagagc
acatgggctttggagggcaacaagtggaagttccaggcatctacagaacttgaaggaaat
gtcactcagataaagtgggggtcccgaaaaaacctgctggcagtgaacaacatcagctct
gtggtgatcctcagtgagcaggccatgttggcacattttcatcagcaggtggccgtggta
caggtgtctcccaacctcttcaatgtgacgaccttcagcgcaggaaccactcacagcctt
cgtgttgatatgaatgctaatggagtctttgctactaaggatgctgtagtattctggaat
gggaagcaagtggctgtctttgagtgctcaggagataccttcagaagtgcaggctctttc
ctttgtgactctccagttctgtctgtgcatggagaaaatctgtacacagtggagccatat
cagatccaggtccgcacctggcagggcacagttaagcagctgctggtgttctctgaagca
gaggggaatccttgcctcctggatgtctgtgggaatttcctggctgtgggaactgatctg
gctcacttgaaaatctttgatctctcacgcagagaggcaaaagtgcactgcaacagcaag
agtttatccaagctgctccctggctgcggagacattgcatctgtgaagtgcaatgctaat
ggcagcaaagtcagcatccttgtcagcagggcagatgggaacatcgattccaagatctgt
ttctatgatgttgaaatggacaaagttatgctctttgatttcaaggctgaacagggagat
ggtagagacaacctttctgctggacaaggcattggcaagtctgtagtggagtatccagaa
ttgcacagtcacatccctgcttgccatttctgggaccagagtgaaccaagactttttgta
tgtgaagcaattcctgaaacaggcctccaacctccagaccaaaagaaaaaccagactgag
ggcacaatggatgtttggattatatcgttcttcagcactgaagagcatggccttttgctg
caggacagctttccattgccttcatcataccaggttcttttgggcatagaggtgccacat
tattactttgcaaaaaagttgtgttttcggaggggatgtgtctataaacctctgggagaa
gctgagaagggagcatccgaatctggctcaggaacagtctctcagatggttgccaggaga
cccatgagagatttcattggattgggagactgtgataagaccaccctggatgccatgctg
aacttcagctactatctgactgctggagacatggatgaggccttcaaatccatcaagctg
ataaaaagtgaggctgtctgggagaacatggctcgcatgtgcgtgaagactcagaggctc
gatgttgccaaaatttgcctggggcacatgggtcatgcaagaggagccaaggcactgcgg
gaggctgagcaagagccagagcagaaggccagggtggctgtgctggccatccagctgggc
atgctggaggatgcagagcagctgtacaaggcttgcaaacggtatgacctcttgaacaag
ttctaccaggcctccaaccagtggcagaaagccatcgaaacggccgaggctcacgacagg
gttcacctgcgcaccacccactacaactacgcgaagcacctggaggcaaccgggcagcag
agcctggcgctcacccactatgagaagtcagacacacacaggttcgaggtacctcgaatg
ctctctgaagacttacaagccctggagaactatgtcaacaagatgaaagacaagagcctg
tggaagtggtgggcacagtacttggagagccagtcagacatggaatctgcattaaaatac
tatgcactggctcaggattatttttccctagtccgtgtccactgctttcaaggcaacatt
cagaaggctgctgaaatagcgaacgaaacggggaatggggcagcctcctatcacctggca
cgccagtacgagagccaggaggacatcaagcaggccgtgcacttctacagccgggcccag
gcgttcaacaacgccatccgcttgtgcaaggcgaataatttagatgatcagctgatgaac
ctggctctcctgagctcaccagaagacatgatagaggcagcctgctattatgaggaaaaa
ggggatcaaatggacagagctgttatgttataccacaaggcaggacacttctccaaagcc
ctggagctggccttcgccacgcagcagttcggggccctacagctcattgctgaggacctg
gatgagaagtccgacccggccctgctcgcccgctgctccgggttcttcattgagcacgcc
cagtatgagaaggcaatggagctgctgctcacggccaagaagtaccacgaagctctgcag
ctctgcctggagcagaacctgaccatcaccgaggagctggccgagaagatgacagtctcc
aaggagtcccaggatctctctgaggagtcccggagggagctgctggagcaaattgctgac
tgctgcatgagacaaggcaactaccacatggccaccaagaaatacacacaagcaggaaac
aagttaaaggctatgagggcattgctgaaatctggtgatactgagaaaattatcttcttt
gcgggagtttccagacagaaagagatttatatcatggcagccaactacctgcagtcactg
gattggcgtaaggatgcaaagattattgcgaatatcatcagcttctacaccaaaggaggg
gcccttgacctcctagcaggtttctatgatgcatgtgctcaggtagaaatcgatgagtat
cagaactatgaaaaagcccacagagcactgacagaagcatacaagtgcctttccaaagca
aaggccagaagccctgtggaacaggaaagcaaacttggccacctgcagagcaggatgagt
ctgatgaagcgattcatccatgctcagagagtttaccctgaagacactgaagaagcagtc
aggcagtgtgaactgctcctggctgaacaggactttgatgatgccatccggcacggcgat
gtcctgggattcttggttcagcattatgcacaagtggaggaattccatacagcttatcgc
tacctggaagagatgcagaaaagaattccagcctcgaacctgagctactatgtgtcccca
cagaccatggaggccgtgcaccgaggagctggcattcccatgagccgagccctggcccca
gagcacactggccacggcagcatggacaacagggaggaggaagaagtggctgatgaagtg
gaggacccctga
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integrated database retrieval system
