Corvus cornix (hooded crow): 104684706
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Entry
104684706 CDS
T03546
Symbol
CIITA
Name
(RefSeq) MHC class II transactivator
KO
K08060
MHC class II transactivator [EC:
2.7.11.1
]
Organism
ccw
Corvus cornix (hooded crow)
Pathway
ccw05164
Influenza A
Brite
KEGG Orthology (KO) [BR:
ccw00001
]
09160 Human Diseases
09172 Infectious disease: viral
05164 Influenza A
104684706 (CIITA)
09180 Brite Hierarchies
09181 Protein families: metabolism
01001 Protein kinases [BR:
ccw01001
]
104684706 (CIITA)
09183 Protein families: signaling and cellular processes
04054 Pattern recognition receptors [BR:
ccw04054
]
104684706 (CIITA)
Enzymes [BR:
ccw01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.11 Protein-serine/threonine kinases
2.7.11.1 non-specific serine/threonine protein kinase
104684706 (CIITA)
Protein kinases [BR:
ccw01001
]
Serine/threonine kinases: Other
TAF1 family
104684706 (CIITA)
Pattern recognition receptors [BR:
ccw04054
]
Cytoplasmic pattern recognition receptors
NOD-like receptors
104684706 (CIITA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NACHT
LRR_6
LRR_4
NLRC4_HD2
LRR_9
LRR_8
LRR_14
NB-ARC
nSTAND_NTPase5
RsgA_GTPase
NPHP3_N
AAA_19
Motif
Other DBs
NCBI-GeneID:
104684706
NCBI-ProteinID:
XP_039416503
LinkDB
All DBs
Position
14:complement(10376482..10404797)
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AA seq
1123 aa
AA seq
DB search
MDSVFVPENGYLDLLHSDIDPLHLCAFLDPKPSGDEEGDFSTDLEVDASSYEQLNNVDFP
CENGDALYPCSNTTDAYAKIAELVEYVLKDQQEKQVEDIFAGNLILDDIAAENTEKFPDI
KMQTCLKRTFLGSAESYCDASEPKYKKIVEVPAVSAGDGSFFAMPFNSHPVSCTSLTNQH
MSFSVPAAHGLERSFIISGLSEPLTSECLPLGMTGYQENPGFAGPPQQIFNFVLENATSD
VIVYPVLTSSMETFVSPSFPVNLCAQHTYATSLGIPNEAAEELARLEKSQKVQDSIIPSK
EPFKRPEQVETFCSSLKDYFRDTCKSVTMEREVNLDHLFIDGTLVQSQIETKTGKNGAKA
IEKELVTCNLQDKEKTAIDRSQIFQIPPHKDLETKVIVVLGKAGMGKSILIQKICQDWSN
GEFSQFEFVFWFDCKQISLPEKQYSLKELLLEFFVKPQEGSTEIFEYILQNPTKVLLVFD
GFKGLHDHENSPRCSASQPEKDLCSIKELLSGLIQKKILNGCTLLFTARPKDKMYQCMSK
VDKTIEIVGFSPQQRELYITKYFEESPYCDSALNLIKECEYLFSHCYSPVMCRFVCFLCE
TVLEMGEQSLPSTLTEVFLKFFQQKIMLMQTDVTTTQNQESLATLARIAWCLGEKHQSTM
KSDLLPSKEVKEFALKYGFFLPFALPRHSDSEEEEFGSTFSDFAIQNFLCALHLLLAEEL
KDKNLTKYLSFLSKKKKPYNWLDLMPRFLAGLMFLQDDSYFCSLSNEDAKQSTKKQKTLL
KYIRRLQINTLCPERLLELLHCVYETQNNYLLQHVALRLEPYLSFLGIVLTPPDVHVLHS
ILKRSRKEFSLDLRNSGIDMQGLQALVSLRNVTSFRASLSDTVGLWKSLEQTKDYELLKA
STEKFVLDPFKAKTMKDISDLSDLVEMQEKMMNCVQGASGCTRYEIPAIRNLRKLEFALG
PACGLQGLLKLVKILAAFPSLRHLDLDALSENGIGDEGAKSLSEVFPTLTSLETLNLSQN
KITDLGAENLATALPSLSSLKTLSLYNNNICDFGAENLAKVLPAMTSLRVLDVQYNKITG
VGAQQLTDSLRKCPHIKNLVMWNPTIPYGVLEHLHQLDSRISV
NT seq
3372 nt
NT seq
+upstream
nt +downstream
nt
atggattcagtatttgtgcctgaaaatggctaccttgatttactgcacagtgatatcgat
cccttgcatctgtgtgctttccttgatcctaagccatccggagacgaagaaggtgacttc
tctaccgatcttgaagttgatgccagcagctatgaacagttaaataatgtggatttccca
tgtgaaaatggagatgcgttgtacccctgttccaacaccacagatgcatatgctaaaata
gctgaattagtagaatatgtgctcaaggatcagcaggagaagcaggtcgaagacattttt
gcagggaaccttattttggatgacattgctgctgaaaacactgagaaatttcctgacata
aagatgcagacatgtcttaaacgaaccttcttaggctctgcagagagttactgtgatgct
tcagaacccaaatataagaaaattgtggaagtccctgcagtgtctgcaggggatggcagt
ttctttgctatgcctttcaacagccatcccgtgagctgcacctccctaactaaccagcac
atgtccttttctgttcctgctgcccatggactggaaagaagcttcataatttctggattg
tcagaacctttgacctcagagtgcctaccactcggtatgacagggtaccaagagaatcca
ggctttgcaggtcctcctcagcagatatttaactttgttcttgaaaatgccacatctgat
gttatagtatatccagtgctgacatcttctatggaaacattcgtatctccaagttttcca
gttaatttatgtgcacaacacacgtatgccacaagccttggaattccaaatgaagcagca
gaagaattagcacgtttagaaaagtctcaaaaagttcaagattccataattccttctaaa
gaacctttcaaaagaccagagcaagtggaaactttctgttcatcacttaaggattatttc
cgagacacttgcaaatctgtgaccatggagcgggaagtaaatctggatcacctgttcatt
gatgggacacttgttcaaagtcaaattgaaaccaagactggaaagaatggtgcaaaagca
attgaaaaggagctggtaacttgcaacctgcaagacaaggaaaagacagccattgataga
agccaaatatttcaaatcccaccacataaagacttagagactaaagtgattgtggtgctg
ggaaaagcaggaatgggaaaaagcattctcattcagaagatctgccaggactggtccaat
ggagagttttctcagtttgaatttgtattttggtttgactgcaaacaaataagcttgcct
gagaagcaatacagcctgaaggaactgctgcttgaattttttgtaaaacctcaagaggga
agcacagagatctttgagtatatattgcaaaatcctactaaagtccttctggtttttgat
ggttttaaaggattgcatgatcacgagaattctcctcgttgctcagccagccagcctgaa
aaggatttgtgcagtataaaggagctgctttcaggactcatccaaaaaaagatactcaat
ggctgtactttattatttacagcaagaccaaaagacaaaatgtaccagtgcatgtccaaa
gtggataagactattgaaatagtaggattttcccctcagcagagagaattgtacataacc
aaatattttgaagaatcaccctactgtgatagtgcactgaatttaatcaaagagtgtgag
tacttgttcagtcattgttacagccctgttatgtgtagatttgtttgttttctctgtgag
acagtacttgaaatgggagagcaaagtcttccttcaactcttactgaagtcttcctgaaa
ttttttcagcagaagataatgcttatgcaaacagatgttacaaccacacaaaatcaagag
agtcttgctaccctagcacgtatagcctggtgtcttggagaaaagcaccaaagcaccatg
aaaagtgatctccttccttctaaggaagttaaagagtttgctctgaagtatggttttttc
ctgccatttgcgctccccagacattcagatagtgaagaggaggaatttgggagcacattc
tctgattttgccattcagaatttcttgtgtgcacttcaccttttgttagcagaagagctc
aaggataaaaatctaacaaagtacctgtcttttctatccaagaagaaaaaaccttataac
tggttagatttaatgcctagatttttggctggtttgatgtttctccaggatgactcctac
ttctgctctctttcaaatgaggatgcaaaacaatcaaccaagaagcagaaaacactcttg
aaatacattagaaggctgcagattaataccctctgtccagagaggttgctggagctttta
cattgtgtttatgaaacacagaacaattatcttctgcagcatgtggccttaagactcgag
ccatacttgtcttttctgggcatagttcttacaccacctgatgtccatgtactgcattca
attttgaaaaggtcaagaaaagagttttccttggatttgcgaaacagcggcattgacatg
caagggctgcaagccttggtcagcctaaggaatgtgacatcgttcagggcctccctcagt
gacacagtcgggctctggaaatctttagaacagacaaaagactacgaactgctgaaagca
tccacagagaaatttgttcttgatccctttaaggcaaagacaatgaaggacatcagtgac
ctctctgaccttgtagagatgcaggagaagatgatgaattgtgtgcaaggagcatctggt
tgcacccgctatgaaattcctgccatcagaaacctcaggaaactcgaatttgctctgggt
ccagcatgtggccttcaaggattgctaaaactcgtgaaaattcttgcagcatttccatct
cttcggcatttagaccttgatgctctgagcgaaaatggcataggagatgaaggagcaaaa
agtctatctgaagtgtttccaaccctgacatcactggaaacattaaatttatcacagaat
aaaataacagacctgggtgcagagaaccttgctacagctctcccttccttgtcctcctta
aaaacgctaagcttgtacaataacaacatttgtgattttggagcagaaaatctggcgaaa
gttcttcctgcaatgacatctttaagagtgctagatgttcagtataacaaaataactggt
gttggagcccagcagctgactgacagcctacgaaaatgtccccatataaagaacttggtg
atgtggaatcccacaattccctatggagttcttgaacaccttcaccagctggactccagg
atcagtgtgtag
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integrated database retrieval system
