Corvus cornix (hooded crow): 104684770
Help
Entry
104684770 CDS
T03546
Symbol
SHMT1
Name
(RefSeq) serine hydroxymethyltransferase, cytosolic
KO
K00600
glycine hydroxymethyltransferase [EC:
2.1.2.1
]
Organism
ccw
Corvus cornix (hooded crow)
Pathway
ccw00260
Glycine, serine and threonine metabolism
ccw00630
Glyoxylate and dicarboxylate metabolism
ccw00670
One carbon pool by folate
ccw01100
Metabolic pathways
ccw01200
Carbon metabolism
ccw01230
Biosynthesis of amino acids
ccw01240
Biosynthesis of cofactors
ccw04981
Folate transport and metabolism
Module
ccw_M00141
C1-unit interconversion, eukaryotes
Brite
KEGG Orthology (KO) [BR:
ccw00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00630 Glyoxylate and dicarboxylate metabolism
104684770 (SHMT1)
09105 Amino acid metabolism
00260 Glycine, serine and threonine metabolism
104684770 (SHMT1)
09108 Metabolism of cofactors and vitamins
00670 One carbon pool by folate
104684770 (SHMT1)
09150 Organismal Systems
09154 Digestive system
04981 Folate transport and metabolism
104684770 (SHMT1)
Enzymes [BR:
ccw01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.2 Hydroxymethyl-, formyl- and related transferases
2.1.2.1 glycine hydroxymethyltransferase
104684770 (SHMT1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SHMT
DegT_DnrJ_EryC1
Motif
Other DBs
NCBI-GeneID:
104684770
NCBI-ProteinID:
XP_010390617
LinkDB
All DBs
Position
14:complement(7000709..7006497)
Genome browser
AA seq
482 aa
AA seq
DB search
MASSTQGLPSAELWASHNKMVMEPLETNDPEVHSIIKKEKQRQRLGLELIASENFASRAV
LEALGSCMNNKYSEGYPGQRYYGGTEFVDELERLCQKRALQAYQLDPQKWGVNVQPYSGS
PANFAVYTALVEPHGRIMGLDLPDGGHLTHGFMTDKKKISATSVFFESMPYKVNPKTGYI
DYDQLEENARLFHPKLIIAGVSCYSRNLDYARMRKIADNNGAYLMADMAHISGLVAAGVV
PSPFDHCDIVSTTTHKTLRGCRAGMIFYRKGTRSVDPKTGKETLYNLESLINQAVFPGLQ
GGPHNHAIAGIAVALRQAMTPEFKAYQQQVVANCKALSTALMEMGYDIVTGGSDNHLILV
DLRSRGTDGGRAERVLELCSIACNKNTCPGDVSALRPSGLRFGTPALTSRGFRQDDFCKV
AQYIHRGIELALRVQKDMSPKATLKEFKDKLEEPKYCGELKALKEEVEAFAATFPLPGLP
VL
NT seq
1449 nt
NT seq
+upstream
nt +downstream
nt
atggcaagctcaacacagggcctccccagcgccgagctctgggcctcccataacaagatg
gtgatggagccgctcgaaaccaatgacccggaggtgcacagcatcatcaagaaggagaag
cagcggcagaggctggggctggagttaatcgcgtcggagaacttcgcaagccgagcggtc
ctggaggccctgggatcctgcatgaacaacaaatactccgagggttacccaggacagagg
tactatggcgggacagagtttgtggatgagctggaaaggctgtgccagaagcgagccctg
caggcctaccagctcgacccccagaagtggggagtcaatgtccagccctactcagggtca
cccgcaaactttgcggtgtacacagccctggtggagccccacggcaggatcatggggctg
gacctgcccgatggtggccacctcacccatgggttcatgacggacaagaagaagatctct
gccacctctgtcttcttcgagtccatgccctacaaggtcaaccccaagaccggttacatt
gactatgaccagctggaggagaacgcccggctcttccaccccaagctgatcatagcaggt
gtcagctgctactcgcggaacctggactacgcccgcatgcggaagatcgctgacaacaac
ggggcttatctgatggccgacatggcccacatcagtgggctggtggccgctggcgtggtg
ccctcgccctttgaccactgcgacatcgtctccaccaccacccacaagaccctgcggggc
tgcagggccggcatgatcttctaccgaaaaggcacccgcagcgtggaccccaagacaggc
aaggagaccctctacaacctggagagcctcattaaccaggcggtgttcccggggctgcag
ggaggcccacacaaccacgccattgcagggatcgccgtggcgctgcgtcaggccatgacg
cccgagttcaaggcttaccagcagcaggtggtggccaactgcaaggcgctctcgactgca
ctgatggagatgggctacgacatcgtcacagggggctctgacaaccacctgatcctcgtg
gatctgcgcagcagaggcacagacggcggccgggccgagcgggtgctggagctctgctcc
atcgcctgcaacaagaacacgtgccccggtgatgtcagcgccctgcgccccagtggcctc
cggttcgggacgccagctctcacctcccgcggcttccggcaggacgatttctgcaaggtg
gcccagtacatccacagagggatcgagctggctctgcgcgtgcagaaggacatgagcccc
aaggccacactgaaggaattcaaggacaaactggaggagccaaaatactgtggggagctg
aaggcactgaaggaagaggtagaagccttcgcagccacgttcccactcccggggctgcct
gtcctgtaa
DBGET
integrated database retrieval system
