Corvus cornix (hooded crow): 104684852
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Entry
104684852 CDS
T03546
Symbol
USP42
Name
(RefSeq) ubiquitin carboxyl-terminal hydrolase 42
KO
K11855
ubiquitin carboxyl-terminal hydrolase 36/42 [EC:
3.4.19.12
]
Organism
ccw
Corvus cornix (hooded crow)
Brite
KEGG Orthology (KO) [BR:
ccw00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
ccw01002
]
104684852 (USP42)
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
ccw04121
]
104684852 (USP42)
Enzymes [BR:
ccw01000
]
3. Hydrolases
3.4 Acting on peptide bonds (peptidases)
3.4.19 Omega peptidases
3.4.19.12 ubiquitinyl hydrolase 1
104684852 (USP42)
Peptidases and inhibitors [BR:
ccw01002
]
Cysteine peptidases
Family C19: ubiquitin-specific protease family
104684852 (USP42)
Ubiquitin system [BR:
ccw04121
]
Deubiquitinating enzyme (DUB)
Ubiquitin-specific proteases (UBPs)
UBP/USP
104684852 (USP42)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UCH
UCH_1
Motif
Other DBs
NCBI-GeneID:
104684852
NCBI-ProteinID:
XP_039416373
LinkDB
All DBs
Position
14:complement(2174419..2192749)
Genome browser
AA seq
1334 aa
AA seq
DB search
MTIVNKPKSSKSKKSSSRRSDKSMKPRTKKMTSRTASLGRVPPTEDPNKVSVDKGPGGHI
YCRSSQKSKPFAQRDLVVNDGIAPPQRILFPPEKICMDWQQTQSVGVGLQNLGNTCFLNS
TLQCLTYTPPLANYMLSLEHTKSCHVEGFCMMCTMESHINQVLCCSNNAIKPTSVINGLK
RIGKHFHFGSQEDAHEFLCFTVDALQKACLNGSTKLDRSSQATTLIYQIFGGYLRSRVKC
LNCKAVSDTYEPFLDVTLDIKAVTSVTRALEQFVKPEQLDGENSYKCSKCKKMVPASKRY
TIHRSSNVLTISLKRFANFTGGKINKDVKYPEYLDLRAYMSQSIGEPLIYALYAVLVHSG
FNCNAGHYLCFIKAGNGLWYRMNDASVELSDIKTVLNQQAYVLFYIRRYDLTLGERAFYL
PAPSYPRTFLGQRGANSKQAAFMGPRLPPHMIKNSSRLNGNGPLKEDPSTVGVAVKRPSS
APPTACVQNWAISRPSMTDPSKPQKITISIHNKLPSRQTVSQAECPSSAVEEEDLKPLPS
ATITNSSAAEPTSNLAAVSVATNVSKQEVPDEIFVEPAVNGNPKLCSDNTVPYGAEPSGK
SEESKGLFKRNCNVISSNGILIGKVVRTLHNSHSSCQNAEERSQHELPKIDSLNGAISLD
NEYKENGLKLDDSTCQVQPVKPSEIFFSKANGVLEMMPKALSPDPQGILESLTYSQLNSL
SEEKSVSGSQKSSDNDGLMETVVMEALFAYEDSRKVSSNFSCEVEKLFTQSDSEAVFTKE
EVAESIITKADNAHLNINGQHKVRKKSLDTEGEFLGQCESEDIRDKDKLRRSKEPELISK
ENPLYMKGSPESKEKLGQTSSIKPDIECSSKKLASLDITDKCQDTKDISNNYVEVPPVND
SSITKLDKVLESQFSRADEGLSNKICEEDDKHMKKNKKKIHDSKRTDKEHYRRKRENSDT
EEKERQTRNKPDDHSHRRRSSHSMETNKQSRHKQEYCSESKYRSSHNERNSPSNGRSSGK
YSRYRSRSRERTDPDRNRYYYSKGDRPWIRERYYQDEPRRWEKCRYYNDYYSSHGTRDGR
ERKSSHCDKDYDKLSQAYSRSHKDYHCKSRWAHSTLSREEDVHHFSSHRANFHHCSVPQQ
HSEKYSRERHTLPPVSAHSNFEDSSRENEKEKLRNSKRKYSHQEESGSDIEKKCRKVDDQ
RIKKYKKVKKKKKSKDKHREKDYKLYDLDCSVLHFDNDNRKHKKKKKKKKHDRKLKDLLE
YLDPRFQKKTWEKKEESHPPDDHLCEQYRNQGSKQPYKEEKPSGAGDSKKYSSMASNEYV
RDVELTDESLQYSD
NT seq
4005 nt
NT seq
+upstream
nt +downstream
nt
atgaccatagttaacaagccaaaatcttcaaagtctaaaaaatcttcctcaagacggtct
gacaaatctatgaaaccccgtactaaaaaaatgacatcacgcactgcaagtttgggccgg
gtacctcctacagaagatccaaacaaagtctctgtggacaaaggtcctggggggcatatt
tattgtagatcatctcaaaaatcaaagccttttgcccaaagagatctagttgttaatgat
gggattgctccgccacaaagaattctttttccacctgagaaaatctgtatggattggcaa
caaacacaaagtgttggagttgggctgcagaacctcggcaacacatgtttccttaattct
actctccagtgtttgacctacacgcctcctcttgccaattacatgctttctcttgagcac
accaagtcatgtcatgtagaaggattctgtatgatgtgcacaatggaaagtcacatcaac
caggtcctgtgttgctctaataatgccatcaaacctacgtctgttatcaatggccttaaa
agaataggaaaacatttccattttggcagtcaagaggatgcacatgaattcttatgcttc
actgttgatgctttacagaaagcttgcttgaatggaagcaccaagttagacagatcttct
caagccaccacgcttatttatcaaatatttggaggatatctaagatctcgagtaaagtgc
ttgaactgcaaagcagtgtcggatacgtacgagccatttctcgacgttactttggatata
aaggcagttacatctgtcaccagagctctagaacaatttgtgaaaccagaacaactggac
ggtgaaaatagctataagtgtagcaagtgtaaaaagatggtcccagcatcaaagagatac
acgatacatcgctcttccaatgttctcacaatatcactgaaaagatttgcaaattttaca
ggtggaaagatcaacaaggatgtaaaataccctgaatatttggatcttcgagcatatatg
tcccaatccattggagaacccctcatctatgctttatatgcagttcttgtacatagtggc
ttcaattgtaatgctggacactatctctgcttcataaaggctggtaatggactttggtac
cgaatgaatgatgcctcagtagagctttctgatatcaaaacagttctcaatcagcaagct
tatgtacttttttatatcaggcgctacgatctgacgctgggcgagcgagccttttacctg
cccgcgccgtcctacccccgcaccttcctcggccagcgcggagccaacagcaagcaggct
gcatttatggggccacgccttcctcctcacatgatcaagaattccagtcgcttaaatgga
aatggacccttgaaagaggatcccagtactgttggtgttgctgtaaaaaggccatcttca
gctccaccaacagcttgtgttcaaaactgggcaatttccaggccttcaatgacagaccct
tcaaagccccagaagatcacgatcagtattcacaacaagctgccctcacgccagacggtg
tcgcaggcggagtgtccgagcagtgctgtggaggaggaggatctgaagccccttccttca
gccacaattacaaactcttccgcagcagagcctacctcaaacctagccgcagtgtcagtt
gctactaatgtctccaagcaggaggttcctgatgaaatctttgttgagccagcagtgaat
ggaaaccctaagctctgttctgataacacagtcccatacggtgcagaaccttcaggaaaa
tccgaggagtccaagggcttgtttaaaaggaattgcaacgtcatatcttccaatggaatt
ctgattgggaaggtggtccgtacattgcataattcccattcgtcctgtcagaatgctgaa
gaaagatcccaacatgagctgccaaaaattgattccttaaatggtgctattagtttagat
aatgaatataaagaaaatggactgaaacttgatgattccacttgccaagtccaacccgtt
aaaccttctgagattttcttctctaaagcaaatggagtgcttgaaatgatgcctaaagct
ttgtcaccagatcctcaaggtatcttagaatctcttacatacagccagttgaacagcttg
tcagaggaaaaaagtgtctctggatctcagaaatcttctgacaatgatggtcttatggaa
actgtagtgatggaagcactgtttgcctatgaagattccaggaaggtttcttccaacttc
agctgtgaggttgagaaactttttactcaatcagattctgaagctgtttttaccaaagaa
gaagttgctgaaagtattataacaaaagctgataatgcacatctcaatattaatggtcag
cacaaggttaggaaaaaatccttggatactgaaggtgaattccttgggcagtgcgagtct
gaagacatcagagataaagacaaactaagaagatcaaaggaacctgaactcatttcaaaa
gaaaatcctttgtacatgaaagggtctcctgagagcaaagagaaattagggcaaacttcc
tctataaagcctgacattgaatgtagttctaaaaaacttgcatctctagatattacagat
aaatgccaagatacgaaggacatttctaataactatgtagaggtaccacccgttaatgac
tcctctattacaaaactggataaagtattggaaagtcaattttctagagcagatgaggga
ctgagtaataaaatatgtgaagaagatgataaacatatgaaaaaaaataagaaaaaaatc
cacgactctaaaagaactgacaaagagcactaccggaggaagagagagaactcggacact
gaggagaaggagaggcaaaccagaaacaaaccagatgatcattcccacaggaggaggagc
tctcacagcatggaaacaaacaagcaaagccgtcataagcaggagtattgcagtgagagc
aagtacagatcctcccacaatgaaagaaacagtcccagtaatggcaggagctcaggaaaa
tattctcgttacagatcccgaagcagagaaaggacagatccagacaggaataggtattat
tattccaaaggagacagaccttggattagagaaagatactatcaagatgaaccacggaga
tgggaaaaatgcagatactacaatgattattattcctcccatggaacaagggatggtagg
gagaggaagtcctctcattgtgataaagactatgacaaattgagccaagcttacagcagg
tcacacaaggattatcattgcaaaagcagatgggctcacagcacactctcccgagaggag
gatgtgcatcacttcagcagccacagagcaaacttccaccactgttcagtacctcagcag
cactcggaaaaatactctcgtgaaaggcacacacttccaccagtgtcagctcactcaaat
tttgaggactcttcccgggaaaatgaaaaagaaaaactaagaaatagcaaaagaaaatac
tcccaccaagaagaaagtggaagtgacatagaaaagaaatgccgaaaggtggatgaccaa
agaatcaaaaagtataagaaggtcaagaagaaaaagaagtccaaagataaacatcgagag
aaggattacaaactttatgatttggattgctctgtgctccactttgacaatgacaatcgc
aaacataagaaaaagaagaaaaagaagaagcacgacaggaaactgaaagacttattggaa
tatttagatcctcgtttccagaagaaaacatgggagaagaaggaagaatcccatcctcca
gatgaccatttatgtgagcaatacagaaaccagggcagtaaacaaccctacaaggaagag
aagccttctggtgcaggtgacagcaagaaatacagctccatggcatccaatgagtatgtc
agagatgtggagctgactgatgaaagccttcaatactcagactga
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