Corvus cornix (hooded crow): 104685497
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Entry
104685497 CDS
T03546
Symbol
SDC1
Name
(RefSeq) syndecan-1
KO
K06257
syndecan 1
Organism
ccw
Corvus cornix (hooded crow)
Pathway
ccw04512
ECM-receptor interaction
ccw04514
Cell adhesion molecules
ccw04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
ccw00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
104685497 (SDC1)
04514 Cell adhesion molecules
104685497 (SDC1)
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
104685497 (SDC1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
ccw04131
]
104685497 (SDC1)
09183 Protein families: signaling and cellular processes
04090 CD molecules [BR:
ccw04090
]
104685497 (SDC1)
00535 Proteoglycans [BR:
ccw00535
]
104685497 (SDC1)
Membrane trafficking [BR:
ccw04131
]
Exocytosis
Calcium ion-dependent exocytosis
Acrosomal exocytosis proteins
104685497 (SDC1)
CD molecules [BR:
ccw04090
]
Proteins
104685497 (SDC1)
Proteoglycans [BR:
ccw00535
]
Cell surface proteoglycans
Syndecan family (transmembrane HSPG)
104685497 (SDC1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Syndecan
Motif
Other DBs
NCBI-GeneID:
104685497
NCBI-ProteinID:
XP_039425330
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All DBs
Position
3:complement(105495340..105521574)
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AA seq
309 aa
AA seq
DB search
MINVVAVWLVALCFQAAVPQTTNLNLPPEDLDSSGDEDDVFSGSGAGPLTDQSRAWRIPG
EPTNSSVLAAPVDFSEQPFPGIESRTEKEVISPSATSNLVTEEPVVAVKDEVSILGSPDG
KPTSHVVTTTVRSPTAHFPSVVHVTPSEASAVVHELEPKMPSSDVPVTKDVLEPHSTVPR
EGDIAATPAATAPKDVVPTHEEVSEDGSGDPGDFILTKEEDLVPTQSSEVLADSERNAKA
AGASGIMDRKEVLGGVIAGGLVGLVFAVFLVVFMLYRMKKKDEGSYSLDEPKQSNGGYQK
PHKQEEFYA
NT seq
930 nt
NT seq
+upstream
nt +downstream
nt
atgataaacgtggtggccgtgtggctggtggccctttgcttccaggctgctgtcccgcaa
actacaaatctgaaccttccccctgaagaccttgattcatctggtgatgaagacgacgtg
ttctcaggttcaggtgcaggtcccctgactgaccagtctcgtgcctggagaatcccagga
gaaccaactaattcctcagtactggcagcaccggtggatttcagtgaacagccatttcct
gggattgagagccgaactgaaaaggaagtaatatctccttctgcaaccagtaatctagtg
acagaggaaccagttgtagctgtgaaggacgaagtgtccatcctgggctcacctgatggg
aaaccaacaagccatgtggtcacaacaactgtgagaagccccactgctcactttccttct
gtggttcatgtaactccttcagaagcctcagctgtggtccatgagctcgaacctaaaatg
cccagctctgatgtgccagtcaccaaggacgtgctcgagccccactctactgtccctcgt
gagggagacattgctgccactcccgcggcgacagctccaaaggacgtcgttcctacacat
gaagaggtttctgaagatggctctggagatccgggagacttcatcttgactaaagaagag
gatttggtccccacccagagctcagaagtactggctgactctgagaggaatgccaaagca
gcaggagcctcgggaattatggacagaaaagaagttcttggaggtgttattgctggagga
cttgtaggcttggtgtttgcagtgtttctagttgtatttatgctgtacagaatgaagaag
aaagatgaaggcagctattcactggatgaaccaaaacagtctaatggaggataccaaaaa
ccacacaaacaagaggaattctatgcataa
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