Corvus cornix (hooded crow): 104685591
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Entry
104685591 CDS
T03546
Symbol
MSH6
Name
(RefSeq) LOW QUALITY PROTEIN: DNA mismatch repair protein Msh6
KO
K08737
DNA mismatch repair protein MSH6
Organism
ccw
Corvus cornix (hooded crow)
Pathway
ccw03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ccw00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
104685591 (MSH6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ccw03400
]
104685591 (MSH6)
DNA repair and recombination proteins [BR:
ccw03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
104685591 (MSH6)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_I
PWWP
MutS_IV
MutS_II
MUM1-like_PWWP
nSTAND_NTPase5
Motif
Other DBs
NCBI-GeneID:
104685591
NCBI-ProteinID:
XP_039423939
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Position
3
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AA seq
1345 aa
AA seq
DB search
MSRQSTLLRFFSKAAPPPAGTEPRRRRSSGERNGLQAAGSPPGGAGRAAARRGENGVKGA
GGGAAAKAPSVSCEYSPGDLVWAKMEGYPWWPCLIYNHPIERTIVRGKGKSTRIHVQFFD
DSPTRGWISIKYLKPYKGSSDGETMKGGMFYSTKPEIKRAMVLADDAMNKDKTKRLELAV
CNEPSDTEEEEEEEMEEMSENASGNSEDCNSEEDAKSNKRGMSRERAVKAKRRRVLDSDS
DHDGSDVEFKPDGKEAASSEEGSSGVDENESSDTEAESVAESPIKVPSKRKRGEVKKPAK
RSSLGNECSETPKRAPTVSSEAKSKLTSFAAPESFESQANASSGGTGGFSVWEHEKLDWL
QEGKRKDAHRRRQGDPDYDPCTLYVPEDYLNKCTPGVRRWWQLKSQNFDAVICYKVGKFY
ELYHMDAVTGVNELGLIFMKGTWAHSGFPETAFGRFSDVLVQKGYKVARVEQTETPEMME
ARCKSTGHSTRFDKVVRREICRIITKGTQTYSVMDCDPSENHSKFLLCMKEKDDSAGTRV
YGVCFVDTSVGKFHVGQFPDDRHCSRFRTLVAHYTPVQVLFEKGNLSVDTQKILKGSLVS
CIQEGLTSGSQFWNASKTLKVLLEEGYFKEKQNSENGCSLPSVIKSLTSESDSLGLTPGE
NSELALSALGGCVFYLKKCLIDQELLSQANFEEYVPVDITTAKTVSSSSLFARTSQRMVL
DGVTLMNLEVLQNGTNGSTEGTLLERIDSCCTPFGKRLLKQWLCAPLCNPKSINDRLDAV
EDLLAVPDKMSEVSEHLKKLPDLERLLSKIHSIGSPLKSQNHPDSRAIFYEELKYSKKKI
ADFLSALEGFKVMNEIVDVMEEVASDFKSKVLKQLVTRKAKNPDGRFPDLSAELTRWDTA
FDHNQARKTGVITPKAGFDPDYDGALQDIKAVEEDLQKYLDKQRKLLGFKSVQYWGTGKN
RYQMEIPESAVSRNLPEEYELRSSRKGYKRYWTKEIEKMLAAMVNAEERRDAALKDCMRR
LFYNFDKNSKDWQTAVECIAVLDVLMSLAHYSQGGDGPLCRPVILLPVENAPPFLELRNS
RHPCITKTFFGDDFIPNDIVIGIKDEGSSSEASCVLVTGPNMGGKSTLMRQAGLLVVMAQ
LGCYVPAEACRLTPIDRVFTRLGASDRIMAGESTFFVELSETSSILQHATEHSLVLVDEL
GRGTATFDGTAIASAVVKELAESIRCRTLFSTHYHSLVEDYSHSGAVRLGHMACMVENES
EDPSQETITFLYKFIEGACPKSYGFNAARLADIPEDVIQKGHRKAKEFEKTTLSLRVFRY
LCQVVDGATSDANAVRKLTAMINRL
NT seq
4038 nt
NT seq
+upstream
nt +downstream
nt
atgtctcggcagagcaccctgctccgcttcttctccaaggccgccccgccgccggccggc
accgagccccgccgccgccgctcctcgggggagcggaacggcctccaggccgccggcagc
cccccgggcggggcgggccgagcggcggcgcggcgcggcgagaacggcgtgaagggcgcg
gggggtggcgcggccgccaaggcccccagtgtgtcctgtgagtactctcctggggacttg
gtgtgggccaagatggaaggttatccctggtggccatgtctcatttacaaccaccccatt
gaaagaacaatagtcagaggaaaaggaaaatccactcgtatccatgtgcagttctttgat
gacagccctacaaggggttggatcagtattaaatacctgaagccatataaaggttcatca
gatggggagacaatgaagggaggtatgttttacagcacaaagcctgaaattaaaagagcc
atggtgttggcagacgatgccatgaacaaagataaaaccaagaggcttgaactggcagta
tgcaatgaaccttcagacacagaggaggaggaagaggaagaaatggaggagatgagtgaa
aatgcatcgggcaacagtgaagactgcaatagtgaggaggatgcgaaaagcaataagcga
gggatgagcagggaaagagctgtaaaagccaagagaaggagagtgctggattctgacagt
gaccacgatggctctgatgtggagttcaagcctgatgggaaagaagcagcaagcagtgag
gaaggcagcagtggggtggatgaaaatgagtcttctgacacagaggcagagagtgttgca
gagagccccataaaagtcccttctaaacgaaagagaggagaggtgaaaaagcctgctaaa
aggagtagcttgggaaatgaatgttctgaaacacccaaaagagccccaacagtctcctca
gaagccaagtctaagctgacatcgtttgcagcacctgaaagttttgagtctcaagcaaat
gctagcagtggaggcactggtggcttctcagtgtgggagcacgaaaagcttgactggctg
caggaagggaagaggaaggatgcgcacaggaggcgccagggtgaccctgattacgacccc
tgtactctgtatgtgcctgaagattatctcaacaagtgcacgccgggggtgcggaggtgg
tggcagctcaaaagccaaaactttgatgctgtgatttgctacaaggttggaaagttctat
gagttgtatcacatggatgcagtcactggcgtgaatgagctgggcctgatctttatgaag
ggcacttgggcccactcaggtttcccagaaactgcatttggccggttctctgatgtgctg
gtgcagaagggctacaaggtggcgcgcgtggagcagacggaaacgcccgaaatgatggaa
gcacgctgcaagtcaacgggccactccaccaggtttgacaaggtggtgcgccgggaaatc
tgcaggatcattaccaagggaacccagacctacagcgtcatggactgcgacccctccgag
aaccacagcaagttcctgctgtgcatgaaggagaaggatgactcggccgggacgcgcgtg
tacggggtctgctttgttgacacctccgtgggcaagttccacgttggccagttcccagac
gaccgtcactgctccagatttaggactttggtagctcattacactcctgtgcaggtgctg
tttgagaaggggaacctgtctgtggacacacagaagatactgaagggctcgcttgtttct
tgcattcaggaagggctgacctcgggttcccagttctggaatgcatctaaaacactaaaa
gtccttcttgaggaaggatatttcaaggagaagcagaattctgaaaatggatgttctctg
ccctctgtaatcaaatctctgacttcagaaagtgactccctgggattaactcctggtgaa
aacagtgaattagctttgtcagctcttgggggatgtgtcttctatctcaaaaaatgtctg
attgatcaggagctgttatcgcaggcgaacttcgaggaatatgtccctgtggatatcact
actgcaaaaaccgtgagttcaagtagtttgtttgccagaaccagccagcggatggtgctg
gatggagtcaccctgatgaacttggaagtcctgcagaacggaaccaatggaagcacagaa
ggtactttgttggaaaggattgattcttgttgtacaccattcgggaagcgactcctgaag
cagtggctctgcgctccgctttgtaatcctaaatccatcaacgatcgtttggatgctgtt
gaggacctcctggcagtgccagataaaatgtctgaagtcagtgagcacctgaagaaactg
cctgaccttgaaaggctgctcagcaaaattcacagcattgggtcaccactcaaaagtcag
aaccatcctgacagcagggccatcttctatgaagaactcaaatacagcaaaaagaaaatc
gctgacttcctgtctgccctggagggatttaaagtaatgaatgaaattgtcgatgtcatg
gaggaggttgccagtgacttcaaatccaaagtcctgaagcagctggtcacccgcaaggcc
aaaaatcccgatggccgcttccctgacctgagtgctgagctcacgaggtgggacactgcc
tttgatcacaaccaggctcggaagacaggagtgattaccccaaaggcaggttttgacccc
gattatgatggagcactacaggatatcaaagctgtcgaggaagatcttcagaagtacctg
gataagcaacgcaagctgcttgggttcaaatctgtgcagtactgggggacaggcaagaac
cggtaccagatggaaatcccagaaagtgctgtatctcgtaatctgcccgaggaatacgag
ctgaggtcgagcaggaagggatacaagcgctactggaccaaggagattgagaagatgctg
gctgcgatggtgaacgccgaggagcgccgcgacgctgccctcaaggactgcatgaggcgc
ctcttctacaacttcgacaagaacagcaaggactggcagacagctgtggagtgcattgct
gtgctggatgtcttgatgtcccttgctcactacagtcaaggtggtgatggacccctgtgc
cgacctgtaattctgctgcctgtggaaaatgctcctcccttcctggaacttagaaattcc
cgccatccgtgcatcacaaaaactttctttggggatgattttattcccaatgatatcgta
attggcatcaaggatgaaggcagcagcagtgaggcctcctgtgtgctggtaaccggccca
aatatgggtggcaaatctacgcttatgcgacaggctggtctcctggtggtcatggcccag
ctggggtgctacgtgcccgcggaagcctgcaggctcacgcccatcgaccgcgtgttcacg
cggctcggagcctcggacaggatcatggccggtgaaagtaccttctttgttgaactgagt
gagacttccagcattctccagcatgcaacagagcattcccttgttctcgtggatgaactg
ggcagaggcacagccacgtttgacggaacagccatagcgagcgcggtggtgaaggagctg
gcggagagcatccggtgccggacgctgttctccactcactaccactccctggtggaggac
tattcccacagcggggctgtacgcctgggccacatggcatgcatggttgaaaatgagagt
gaagatccaagtcaggaaacaattacgttcctgtacaagttcattgaaggagcctgccca
aagagctacggcttcaatgcggcaagacttgcagatattccagaggatgtcattcagaag
gggcacagaaaagccaaagaatttgaaaaaacaaccctctcacttagagtatttaggtac
ctgtgccaggtggtggatggagcaaccagtgatgcaaatgcggttcggaaactcacagcg
atgatcaaccggctttag
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