Corvus cornix (hooded crow): 104685720
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Entry
104685720 CDS
T03546
Symbol
MSH2
Name
(RefSeq) LOW QUALITY PROTEIN: DNA mismatch repair protein Msh2
KO
K08735
DNA mismatch repair protein MSH2
Organism
ccw
Corvus cornix (hooded crow)
Pathway
ccw03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ccw00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
104685720 (MSH2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ccw03400
]
104685720 (MSH2)
DNA repair and recombination proteins [BR:
ccw03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
104685720 (MSH2)
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_IV
MutS_II
MutS_I
AAA_27
DUF6437
Motif
Other DBs
NCBI-GeneID:
104685720
NCBI-ProteinID:
XP_039425352
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All DBs
Position
3:14987526..15033142
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AA seq
936 aa
AA seq
DB search
MAVEPPREAVWPEGAGAEAGFVRAVLSLPEKPDTTVRFFERGDYYTVHGADARLAARELF
RTRAVIRQLAGAPGTQKLESVVLSKMNFESFVRDLLLVRHYRVEVYKNKAGSKSVKENDW
YLAYKGSPGNLAQFEEVLFANNDMSTAIGVVGVKLSAADGQRVVGVGYVDTTLRKLSVCE
FPDNDQFSNLEALLVQLGPKECVLPGGETAGEMGKLRQVIQRGGILITDRKKADFTTKDI
VQDLNRLLKSKKEEQMNSAALPEMEKQVAVSSLSAVIKFLELLSDESNFGQFELTTFDLS
QYMVLDNAAVQALNLFQSSVENANTAQSLAGLLNKCRTPQGQRLVNQWIKQPLMDKTRIE
ERLNLVEAFVMDPELRQCLQEDLLRRFPDLNRLAKKFQRQAANLQDCYRMYQAINQLPNV
VQALEKHEGAHQMLLLAVFITPLIDICSDFSKFLEMIETTLDMDKVENHEFLVKASFDPN
LTELREKMNELEEKMQSLLKTAAKELGLEAGKSIKLETNSQFGHHFRVTCKEEKALRNNS
KYGIIDTQKNGVKFTNSKLSAINDEYIRNREEYEEAQDAIVKEIINIASGYAEPIQTMND
VIAQLDAIVSFAHVSNGAPVPYVRPVLLEKGQGRIVLKGARHPCIEVQDEVAFIPNDITF
EKGKQMFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVPCESAEVTIVDCILARVGAGDS
QLKGVSTFMAEMLETASILRTATENSLIIIDELGRGTSTYDGFGLAWAISEYIASKICGF
AMFATHFHELTALADQVPTVNNLHVTALTSDDTLTMLYRVKEGVCDQSFGIHVAELAAFP
KHVIESAREKALELEEFQNIGKSKESEGEPPAKKLYREREEGEKIIEDFLCQVKALPLTD
MSEEDIKVKLKQLRNDVLAKNNSFVNEIISQTKVIS
NT seq
2811 nt
NT seq
+upstream
nt +downstream
nt
atggcggtggagccgccgcgggaggccgtgtggcccgagggcgcgggggccgaggcgggc
ttcgtgcgcgccgtgctctcgctgcccgagaagcccgacaccaccgtgcgcttcttcgag
cgcggcgactactacacggtgcacggcgcggacgcgcggctggccgcccgcgagctcttc
cgcacccgcgccgtcatccgccagctggccggggcaccgggaactcagaagcttgagagt
gttgtgcttagtaaaatgaactttgaatcttttgtgagggacctgcttctggttcgtcat
tacagagttgaagtttacaagaacaaagcagggagcaaatctgtcaaagaaaatgactgg
tatttagcttacaagggttctccaggaaatcttgcccagtttgaggaagttctctttgcc
aacaatgatatgtccacagccattggggttgtgggggttaagctgtctgctgctgatgga
cagagagtagtaggagtgggctatgtcgacactacgctgagaaaattgagtgtttgtgag
ttcccagataatgatcagttctcaaaccttgaagctctactggttcagctgggcccaaag
gagtgcgtgctgccaggaggagaaactgcaggagagatggggaaactgagacaagtcatt
cagaggggaggaatcctgattacagacaggaagaaggcagatttcacaaccaaagatatt
gttcaggatctcaatcgcttgttgaagtcaaaaaaagaagagcagatgaatagtgcagca
ctgccagagatggaaaagcaggttgctgtttcatctttgtcggctgttatcaagtttttg
gagttgctgtcagatgagtctaattttggacaatttgaactgactacttttgatcttagt
caatatatggttctagacaatgcagctgttcaagccctcaacctttttcagagttctgtg
gagaatgcaaatactgcacagtctctagctggtttactgaataaatgcagaacccctcaa
ggacaaagactagttaatcagtggatcaaacaaccacttatggacaagaccagaattgaa
gaaaggttgaatttggttgaagcttttgtgatggatccagaactacgtcagtgccttcaa
gaagatctgttacgtcgctttccagacctcaaccggctggcaaagaaatttcagagacaa
gcagcaaacttacaagactgctaccgaatgtaccaggctatcaatcaactgcctaatgtt
gtgcaagcactagaaaaacatgaaggagctcaccagatgttgttgttagcggtatttata
acacctcttattgatatctgctctgacttctcaaagtttctggagatgatagagacaaca
ttggacatggataaggtggagaatcacgaatttcttgtcaaggcttcttttgatcctaat
ttaacagaattaagagagaagatgaatgaactggaagaaaaaatgcagtctttgttaaag
actgcagccaaagaactaggtttggaagctggcaaaagtatcaaactggagacaaattca
cagtttggacatcactttagagtaacttgcaaggaggagaaagctctccgtaacaattcg
aaatacggaatcattgatacacagaagaatggtgtgaaatttactaacagcaaactgagc
gccatcaatgatgagtacataaggaacagggaagagtatgaagaggctcaggatgcaatt
gttaaggaaatcattaacattgcttcaggttatgcagagcctatccagacgatgaatgat
gtgatagctcagctggatgccattgtcagctttgctcacgtgtcaaacggggccccggtg
ccctacgtccgtcccgtccttctggagaagggacaaggcaggattgtgctgaagggtgcc
aggcatccctgcatcgaagtgcaggatgaggtggccttcatccccaatgacattacattt
gagaagggcaagcagatgttccacattattactggccctaacatggggggaaaatcaaca
tacatccgacagacaggggtgattgttcttatggcccaaatagggtgttttgtgccgtgt
gagtccgcagaggtaaccattgtggattgtatcctggctcgggtgggagcaggagacagc
cagctgaaaggagtgtccactttcatggctgaaatgctggaaactgcttcaatccttagg
acagcaactgaaaactccctgataatcatcgatgagctgggaagaggaacttctacctat
gatggctttggcttagcgtgggctatctcagaatacattgccagcaaaatctgtgggttt
gccatgtttgctacacacttccatgaactgacagctcttgctgaccaggtgccaacagta
aataacctccatgtcactgctctgaccagtgatgacacactgacgatgctttatcgtgtc
aaggaaggtgtctgtgaccagagttttggaatacatgtagcagagttggcagctttccca
aaacacgtgatagaaagtgcaagagagaaagcattggagctggaggagttccaaaacatt
gggaagtccaaggaatctgaaggagaaccaccagccaagaagttatatagagaaagagag
gaaggtgaaaagataattgaggattttctttgtcaagtgaaagcattgcccctgacagat
atgtcagaagaagacatcaaagtcaagttgaaacagctgagaaatgatgtgctggcaaag
aacaacagttttgtgaatgaaataatttctcaaacgaaagttatatcatga
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