Corvus cornix (hooded crow): 104686100
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Entry
104686100 CDS
T03546
Symbol
UPF3A
Name
(RefSeq) regulator of nonsense transcripts 3A isoform X1
KO
K14328
regulator of nonsense transcripts 3
Organism
ccw
Corvus cornix (hooded crow)
Pathway
ccw03013
Nucleocytoplasmic transport
ccw03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ccw00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
104686100 (UPF3A)
03015 mRNA surveillance pathway
104686100 (UPF3A)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ccw03019
]
104686100 (UPF3A)
Messenger RNA biogenesis [BR:
ccw03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
104686100 (UPF3A)
mRNA cycle factors
P-body specific factors
104686100 (UPF3A)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Smg4_UPF3
Motif
Other DBs
NCBI-GeneID:
104686100
NCBI-ProteinID:
XP_039405445
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All DBs
Position
1:complement(91403103..91430226)
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AA seq
518 aa
AA seq
DB search
MRSERAAGLGPGWGGGRDKRPMDPPLQQESPRRDTDAPPNPPPPPSPPSPLPPPLHPAPG
KQREEKKTALSKVVIRRLPPCLTKEQLEEQLHPLPAHDYFEFCTADPREHFLSIKHCIAI
ICHVMDSSQDFSKLCACVFQSFQLTGKATGQGLEYPAVVEFAPFQKISKKKLKKKDAKAG
SIEDDPEYRKFLESYCADEEKICANPEILLGEIEAKTRELIARRTTPLLEYIKNRKLEKQ
RIREEKREERRRRELEKKRLREEEKRKRREEERRKRKEVEKQKKISEKEIRIKLLKKPEK
GDELASEKHKDKGEEADIEENKWDKSPGSGSIKSKSLESSLKELKEKSQNDSDKEQRDLE
RRFREKEPERQRYRLDDGRKHRTHYEFDKFMRRNEEELKWGKGYNQDRGKKGNYNYSFTV
EAVDKLGKEDKCDDMASKKERIRNKSCKCTGYCSSQLMLVKDRPAMQLYQPGARIRTHMG
PTSKTYDCSGKSFEDALDKKYEADNSAGASSGKTEVAE
NT seq
1557 nt
NT seq
+upstream
nt +downstream
nt
atgcgctcggagcgggcggcggggctggggccgggctggggcggcggccgcgacaagcgg
cccatggaccccccgctgcagcaggagtcgccgcgccgcgacacggacgctccgccgaac
ccgccgccgccgccttccccgccgtccccgctgccgccgccgcttcacccggcgccggga
aaacagcgggaggagaagaaaacggcactgagcaaagtggttattcgaaggcttcctcct
tgtctaaccaaggagcaactggaggaacagctgcatcctctacctgcccatgattatttt
gagttttgcactgctgatcccagagaacactttttgagtataaagcattgtattgccata
atctgtcatgttatggatagttcacaagatttcagcaaactctgtgcatgtgtcttccag
tcattccagctaacaggaaaagctacaggacaaggtttggaatatcctgcagtggttgaa
tttgctccattccagaagatttcaaaaaagaagctgaagaagaaagatgccaaagccgga
agcattgaagatgatccagaatataggaaatttttagagagttattgtgctgatgaagag
aagatctgtgccaatcctgagattcttttgggagagattgaggccaaaacaagggaactt
attgctagaagaacaacaccccttttggaatatattaaaaatagaaaattagaaaagcag
agaatacgagaagagaaaagagaagaacggaggcggagagaattggagaagaaacgtttg
cgggaggaagagaaaaggaagcgcagagaagaagaaagacgtaaaagaaaagaagtggag
aagcaaaagaaaatttctgaaaaagaaataaggatcaagcttctcaagaagcctgaaaaa
ggagatgaactggccagtgaaaagcacaaagacaaaggtgaagaagctgacattgaggaa
aacaaatgggataaatcacctggatctgggagtataaaatccaaatctttggagagttca
ctaaaagaacttaaggaaaagtcacaaaatgatagtgacaaagagcaaagagatttggag
agaagatttcgagaaaaagaacctgaaagacaaaggtatcgattggatgatggcagaaag
catagaactcactatgagtttgacaagtttatgagaaggaatgaagaagagctgaaatgg
gggaaaggatacaaccaagacagaggaaagaaagggaactacaactacagcttcactgtg
gaggcagtagacaaactgggtaaagaggacaagtgtgatgacatggcatccaaaaaggag
cgcataagaaataagagttgcaagtgcacaggctattgttcttctcagctgatgttagtg
aaggatcgtccagcaatgcagttataccaaccaggagctcgcatccgaacacatatggga
cctacaagtaaaacctatgactgcagtgggaaatcctttgaagatgctcttgataaaaag
tatgaggcagataattcagctggagctagttctggaaagactgaagtagcagaataa
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