KEGG   Corvus cornix (hooded crow): 104686327
Entry
104686327         CDS       T03546                                 
Symbol
COL4A1
Name
(RefSeq) collagen alpha-1(IV) chain
  KO
K06237  collagen type IV alpha
Organism
ccw  Corvus cornix (hooded crow)
Pathway
ccw04510  Focal adhesion
ccw04512  ECM-receptor interaction
ccw04820  Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:ccw00001]
 09130 Environmental Information Processing
  09133 Signaling molecules and interaction
   04512 ECM-receptor interaction
    104686327 (COL4A1)
 09140 Cellular Processes
  09144 Cellular community - eukaryotes
   04510 Focal adhesion
    104686327 (COL4A1)
  09142 Cell motility
   04820 Cytoskeleton in muscle cells
    104686327 (COL4A1)
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:ccw04147]
    104686327 (COL4A1)
   00536 Glycosaminoglycan binding proteins [BR:ccw00536]
    104686327 (COL4A1)
Exosome [BR:ccw04147]
 Exosomal proteins
  Exosomal proteins of other cancer cells
   104686327 (COL4A1)
Glycosaminoglycan binding proteins [BR:ccw00536]
 Heparan sulfate / Heparin
  Extracellular matrix molecules
   104686327 (COL4A1)
SSDB
Motif
Pfam: Collagen C4
Other DBs
NCBI-GeneID: 104686327
NCBI-ProteinID: XP_039405994
LinkDB
Position
1:93674274..93794828
AA seq 1669 aa
MRLWLGFGLLLSAELSAVSAAGCSGCGKCDCSGVKGQKGERGLPGLQGVIGFPGMQGPEG
PPGPPGLKGDTGEPGLPGTKGTRGPPGVSGFPGNPGLPGIPGQDGPPGPPGIPGCNGTKG
ERGPVGPPGLPGLTGSIGPPGPPGMKGDPGEVIGPAHPGVLKGEKGFPGQPGLPGPPGAS
GFQGPMGPQGPPGEPGPPGAPGLPGEKGYMGLGFQGPKGEKGEQGVRGPPGPPGPAPHMK
EKGSEIIKGEKGDPGEKGEQGFPGLPGSGFKGDKGEPGKPGPRGKPGKDGEPGLKGEPGL
PGGFGIPGRPGEPGSKGDKGERGYPGPPGRVIDAGPVDTFGEKGDPGVSGLPGLKGQKGE
KGFPGAQGIPGPPGRPIPDRVGSPGVPGERGEKGEKGSPGFPSPGIPGRDGLPGPPGLPG
PPGPPGKTDGIDQCQQGEPGAPGSPGLPGRDGFPGEMGEKGDKGEACALCDKVGPPGLPG
PQGPPGPAGFPGQAGFKGDRGLPGLDGLPGVPGPPGTPGLMGSPGAKGEPGDFTYDSILK
GEKGDPGFPGQPGIPGREGRPGKDGFPGPQGPKGAAGTAGLKGERGPPGQPGFPGVRGER
GFPGPPGIGTAGLPGEKGDRGFAGTPGLPGLPGAKGEAGRTISLPGPPGADGLPGPPGFP
GPQGDKGNPGLPGRPGLPGEKGAVGQPGIGFPGPPGPKGFQGQPGSPGLPGTPGTPGLDG
LPGVPGLQGQKGEPGVGLPGPKGLPGPPGPAGIPGEKGNPGLPGLRGEQGFPGIPGQQGF
RGDPGLPGLQGLQGPPGAPGLGPPGLPGPAGQPGPQGPPGFPGVKGERGFPGVPGLDMPG
PKGEKGSQGQPGVPGSVGLPGLPGPQGAVGLKGSAGPKGEMGVMGAPGLPGIPGPAGDRG
LPGEKGSQGFKGVIGPQGDPGVKGDKGEAGLPGKPGTIDNMDMVSLKGQKGDQGEKGDHG
ATGEKGLRGDYGEPGIPGRDGEPGTPGQPGPKGDQGPPGYPGDPGVPGQKGSVGEMGLPG
TPGEKGLPGVPGSPGTPGFPGQKGEKGDKGAPGFPGIGFPGSPGEKGEPGRTGSPGLSGD
KGEKGSAGIPGMPGAPGPKGSPGMAGFPGSPGRHGEKGEKGLPGLSGIPGLKGEPGEPGL
PGPAGAIGQKGEPGYDGIPGAAGAKGEQGLPGRGLPGFPGAKGDKGAKGEVGFPGSPGSP
GIPGLKGEPGYAGPPGPKGNQGLPGLPGSAIEGPKGDRGPQGQPGLPGLPGPIGPPGPPG
LKGAKGEQGSSGWPGSPGGPGMKGDPGFQGVPGTPGLPGDIGPKGDLGPPGVPGIPGPKG
TPGFPGLKGERGDQGLPGSKGLQGPPGPPGPFQLVKGDPGLPGPVGPVGLKGFPGLPGPK
GQQGVTGPSGVPGPPGSPGFDGQPGQKGEIGPYGPPGPRGFPGPPGPDGLPGAMGPPGAP
SVAHGFLVTRHSQTIEEPSCPFGTRLIYHGYSLLYVQGNERAHGQDLGTAGSCLRKFSTM
PFLFCNINNVCNFASRNDYSYWLSTPEPMPMNMAPITGDNIRPFISRCSVCEAPAMVIAV
HSQTIQIPPCPEGWSSLWIGYSFVMHTSAGAEGSGQALASPGSCLEEFRSAPFIECHGRG
TCNYYANAYSFWLATIERNEMFKKPTPSTLKAGDLRSNVSRCQVCMRKT
NT seq 5010 nt   +upstreamnt  +downstreamnt
atgcggctctggctgggcttcgggctgctgctgagcgccgagctcagcgccgtgtccgcc
gcgggatgttccggttgtggaaaatgtgattgcagtggagtaaaagggcaaaagggagaa
agaggcttgccgggactacagggtgtgattgggtttcctggaatgcaaggacctgaaggt
ccccctgggccaccagggcttaagggtgatactggagaaccaggactgccaggaacaaag
ggaacaagaggccccccaggagtatcaggctttccaggaaacccaggccttcctggcatt
cctggacaagatggccctcctggtccacctggcattccaggatgtaatggcacaaagggt
gaaagaggtccagtaggtcccccaggtttaccaggactgactggaagtataggacctcca
ggacctcctggcatgaagggagatccaggtgaagtgattggtcctgcacatcctggcgtg
ctaaaaggtgaaaaagggtttcctggccaacctggactgcctggtccacctggagcttca
gggtttcaggggccaatggggccacaaggtcctccaggagagccaggtcccccaggggca
ccaggacttccaggcgagaagggctacatgggcttgggctttcagggtcccaaaggtgaa
aagggagaacaaggggtaaggggccccccaggacccccaggaccagcaccacatatgaaa
gaaaaagggagtgaaatcataaagggagaaaagggtgatccaggtgaaaagggcgaacag
ggattcccaggattgcctggttcaggtttcaaaggagacaagggtgaacctgggaagcct
ggtccccgtggaaagcctggaaaagatggtgaaccaggactgaaaggagaacctggtttg
cctggagggtttgggattccaggacgacctggggagcctggctcaaagggtgacaaaggg
gaacgaggctatccaggacctccaggaagagtgatagatgctggaccagtagataccttt
ggtgaaaaaggagaccctggagtttcaggtttgcctggactgaaaggtcaaaaaggtgaa
aaaggcttccctggtgcacaaggaatcccaggacctccaggtcgaccaattccagacagg
gtaggatcacctggtgtccctggagagagaggtgaaaaaggtgaaaagggttctccagga
tttccttcacctggaatccctggaagagatggtctgccaggtccccctgggttgcctggc
ccaccaggacctccaggcaaaacagatggaattgatcagtgccagcagggagaacctggt
gcaccaggtagtcctggacttccaggaagagatggatttccaggagagatgggagagaaa
ggtgacaaaggtgaagcctgtgccttgtgtgataaagtaggacctcctggacttccagga
ccacaagggccaccaggtccagcaggtttcccaggacaagcgggtttcaagggtgacaga
ggcttacctggacttgatggccttccaggggtacctggcccccccggtactccaggactt
atgggcagccctggggcaaaaggagaacctggagattttacttacgattctatcctgaaa
ggggaaaagggagatcctggtttcccaggacaaccaggtattcctggaagagaaggaaga
ccaggaaaagatggatttccaggtccccagggtccaaaaggagcagcgggtacagctggc
ttgaaaggagaacgtggtccccctggccagcctggattccctggagtgcgtggtgaaaga
ggttttcctggcccacctgggataggtactgcaggattacctggtgaaaaaggagacaga
ggctttgctggaaccccaggtttaccaggacttccaggagcaaagggtgaagcaggacga
actatatctctccctggacctcctggggcagatggccttcctgggccacctggtttccct
ggaccccaaggtgacaaagggaatcctgggcttccaggtagacctggcctaccaggagaa
aaaggtgctgtcgggcagccaggtatagggttccctggacctcccggtcccaaaggtttc
caaggtcagcctggctcacctggtctgccaggaactccaggaacccctggtctggatggt
ttgccaggagttccaggtttacaaggccaaaagggtgaacctggtgtaggtctccctggc
cctaagggattgccaggaccccctggcccagctggcatccctggagaaaagggaaatcca
ggactgcctggcttacgtggcgagcaaggctttccgggcatacctggacagcaaggattc
agaggtgatcctggtctcccaggtctccaaggcttgcagggccctccaggcgcaccgggg
ctgggccctccaggattgccaggacctgctgggcagccaggaccccagggaccaccaggg
tttcctggagtaaaaggagaaaggggcttccctggtgtcccaggtctagatatgccagga
ccgaaaggggaaaaaggcagccagggccagccaggagtcccgggctctgtggggttacct
ggcctgccaggtccacagggggctgttggactgaaaggatcagcaggacccaaaggagaa
atgggagttatgggagctcctggattgccaggaattcctggaccagctggagatcgaggg
ttacctggtgaaaaaggtagccaaggtttcaaaggtgtaattggaccacagggtgatcct
ggtgttaagggagataaaggtgaagctggtctcccaggaaaacctggaacaatagacaac
atggacatggttagcctcaaaggccagaagggagatcaaggagaaaaaggggaccatgga
gcaacaggagaaaaagggctacgtggggattatggagaaccaggaattccagggagggat
ggtgaacctggtactccaggacaaccaggaccaaaaggtgatcagggccccccaggatac
ccaggggatccaggagttccaggacaaaaaggatcagttggtgaaatgggtttgccagga
acacctggagaaaagggtcttcctggagtaccaggttcaccaggcacaccagggttccct
gggcaaaaaggtgaaaaaggagacaaaggagcaccaggttttcctggaatcggctttcca
gggtctcctggtgagaagggagaaccaggaagaacgggtagtccaggtttatctggagat
aagggtgaaaagggtagtgcaggaattcctggaatgccgggtgccccaggtcccaaagga
tcccctggcatggcaggatttccaggaagccccggccgccatggagagaagggtgaaaaa
ggactcccaggcttaagtgggattccaggtttaaaaggagaaccaggtgaacctggtctt
ccgggtcctgctggtgccattggtcagaagggtgaaccaggttatgatgggattccaggt
gcagctggtgcaaagggtgaacaaggtcttccaggtagaggacttccagggtttcctggt
gcaaagggagataaaggtgcaaaaggcgaagtgggttttccaggatccccaggaagtcca
gggatcccaggcctgaaaggggaaccaggatatgcaggtccaccaggccctaaggggaac
caaggtcttcctggactaccaggaagtgcaattgaaggccctaaaggagacagaggaccc
caaggccaacctggtcttccaggtttaccaggtccaatagggccaccaggacctccaggt
ctgaaaggggccaaaggagagcaagggagcagtggctggccagggtctcctgggggtccg
ggaatgaaaggtgatccgggtttccaaggagtgccaggtactcctggtttgccaggagat
attggtccaaagggtgatcttggacctccaggagttccaggtattccaggtccaaaagga
actcctggcttcccaggccttaagggtgagcgaggtgaccaaggtcttcctggatctaaa
ggtttacaaggcccaccaggcccaccaggtccttttcagcttgttaaaggagatcctggc
ttacctggccctgtaggaccagttggtctcaagggattcccaggacttccaggtcccaaa
ggacagcaaggagtgacaggaccttcaggtgtacctggaccacctggtagtccagggttt
gatggtcaacctgggcagaaaggggaaattggtccttatggtcccccagggcccagagga
ttccctggtccacctggtcctgatggcttgcctggggctatgggcccaccaggggcacca
tctgttgctcatggcttccttgttaccagacacagtcaaaccattgaagaaccgtcgtgt
ccatttggaacaaggctgatttaccacggctactccttgctctatgtacaaggcaatgaa
agagcacatggccaagatctgggcacagcaggaagctgtcttcgtaaatttagtaccatg
cctttcttattctgcaatatcaacaatgtctgtaattttgcatcaaggaatgactactcc
tactggctgtctactcctgaacccatgccaatgaatatggctcctatcactggtgataat
atcagaccattcatcagcagatgctctgtgtgtgaagctcctgctatggtaatagctgtt
cacagtcaaacaattcaaataccaccctgtcctgaaggctggagttcactttggattggt
tactcctttgtcatgcacaccagtgctggtgcagagggctctggccaggccctggcgtcc
cctggctcctgcctagaggagttccgcagcgctcccttcattgaatgccatggccggggc
acctgcaattattatgcaaatgcttacagcttctggcttgccactatagaaaggaatgag
atgttcaagaaaccgactccctcaactttgaaagcaggggatctacgctcaaatgttagc
cgttgtcaagtctgtatgagaaaaacataa

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