Corvus cornix (hooded crow): 104686356
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Entry
104686356 CDS
T03546
Symbol
DDX3X
Name
(RefSeq) ATP-dependent RNA helicase DDX3X
KO
K11594
ATP-dependent RNA helicase DDX3X [EC:
5.6.2.7
]
Organism
ccw
Corvus cornix (hooded crow)
Pathway
ccw04622
RIG-I-like receptor signaling pathway
Brite
KEGG Orthology (KO) [BR:
ccw00001
]
09150 Organismal Systems
09151 Immune system
04622 RIG-I-like receptor signaling pathway
104686356 (DDX3X)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ccw03019
]
104686356 (DDX3X)
03041 Spliceosome [BR:
ccw03041
]
104686356 (DDX3X)
03036 Chromosome and associated proteins [BR:
ccw03036
]
104686356 (DDX3X)
Enzymes [BR:
ccw01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
104686356 (DDX3X)
Messenger RNA biogenesis [BR:
ccw03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
104686356 (DDX3X)
mRNA cycle factors
Common to processing body (P body) and stress granule
104686356 (DDX3X)
Spliceosome [BR:
ccw03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
104686356 (DDX3X)
Chromosome and associated proteins [BR:
ccw03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
104686356 (DDX3X)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Utp25_C
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
104686356
NCBI-ProteinID:
XP_039408265
LinkDB
All DBs
Position
1:110968178..110985896
Genome browser
AA seq
652 aa
AA seq
DB search
MSHVAVENALSLDQQFSGLDLNSSDSQSEGSSTSKGRYIPPHLRNREASKQGFDSGGWSS
RRDKDAYSSFGARSDRDAKSSFFDRGTGSRGGRYEERGRGGDYDRSGFGRFDRGGNSRWC
DKSDEDDWSKPLPPSERLEQELFSGSNTGINFEKYDDIPVEATGSNCPPHIESFSDVDMG
EIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILSQIYADGPG
DALRAMKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFAYRSRVRPCVVYGGADIGQ
QIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQD
TMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQKVVWVEEPDKR
SFLLDLLNATGKDSLTLVFVETKKGADALEDFLYHEGYACTSIHGDRSQRDREEALHQFR
SGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNER
NINITKDLLDLLVEAKQEVPSWLENMAYEQHHKGGGSRGRSKSSRFSGGFGARDYRTSSG
FGSSSSSSSRSTSSRSGGSGSRGFGGGGYGGFYNSDGYGGNYNSQGVDWWGN
NT seq
1959 nt
NT seq
+upstream
nt +downstream
nt
atgagtcatgtggcggtggaaaatgccctcagtctagaccagcagttttctggtctagac
ttgaattcttcagactctcagagtgaaggaagctctacaagcaaaggccgatacattcct
cctcacttgcggaacagggaagcttcaaaacagggtttcgatagtggtggctggagttcc
agaagagacaaggatgcttacagcagcttcggtgcgcggtccgaccgcgacgctaaatcc
agcttcttcgaccgtggaaccggatcgagaggagggagatacgaagagcgtggcagagga
ggggactatgaccggagtggtttcggcagatttgaccgtggtgggaacagccgctggtgt
gacaaatcagatgaggatgactggtcaaagcctctcccccccagtgaacgcctggaacag
gaacttttttcaggaagcaatactggcattaactttgagaaatatgatgatattcctgtt
gaagcaacaggcagcaactgtcctccacatattgaaagtttcagtgatgtcgacatggga
gaaattataatgggaaacattgaactcacacgctacacccgtcctactccagtacagaaa
catgcaatacctattattaaagaaaagagagacttaatggcctgtgctcagacagggtct
gggaaaacggctgcatttcttctgccgatactgagccagatatatgcagatggccctggt
gatgccttgagagcaatgaaggagaatgggaggtatgggcgccgtaagcaatatccaatc
tcactggtcttggctcccactagagaactggctgtgcagatctatgaggaagccagaaag
tttgcataccgctccagagttcgcccctgtgttgtatatggtggtgcagacattggccag
cagatccgtgacttagaacgtggatgtcacttgcttgtagcaactccaggacgactggtt
gatatgatggagaggggaaagattggactggatttctgcaagtacttagtccttgatgaa
gctgacagaatgcttgacatggggtttgaacctcaaattcgtcgaattgttgaacaagat
actatgccaccaaaaggggttcgtcacaccatgatgttcagtgctactttccccaaggaa
atccagatgcttgctcgtgacttccttgatgaatacatctttctggctgttggcagagta
ggttctacgtctgagaacattacacagaaagtagtgtgggtggaagagccagacaaacga
tcgttcctgcttgacctgctaaatgccacaggtaaagattccttgactttggtgttcgtg
gaaactaaaaaaggggcagatgctctcgaagacttcctgtaccatgaaggctatgcctgt
acaagtatccacggagatcgctcccagagggacagagaggaagcactgcaccagttccgc
tctggcaagagccccattcttgttgccacagcagtagcagcaagaggactggatatctca
aacgtaaagcatgtcataaactttgacttaccaagtgacattgaggagtacgtacatcgt
attggtcgtacgggccgtgtaggaaacctcggtcttgccacttcattcttcaatgagagg
aacataaacatcacaaaagacttgcttgatctccttgtggaggctaagcaagaagtacca
tcttggctggagaacatggcttatgaacagcatcacaaaggaggaggcagccgtgggcga
tctaagagcagtcggttcagtggaggcttcggtgccagggattaccggacgagcagcggc
ttcggcagcagcagctccagcagcagccggtcgaccagcagccgcagcggcgggagcggc
agcagaggcttcggaggtggtggttatggaggcttctacaacagtgatggatatggagga
aactataactcccagggggtggactggtggggcaactga
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