Corvus cornix (hooded crow): 104686517
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Entry
104686517 CDS
T03546
Symbol
SHH
Name
(RefSeq) sonic hedgehog protein
KO
K11988
sonic hedgehog
Organism
ccw
Corvus cornix (hooded crow)
Pathway
ccw04340
Hedgehog signaling pathway
Brite
KEGG Orthology (KO) [BR:
ccw00001
]
09130 Environmental Information Processing
09132 Signal transduction
04340 Hedgehog signaling pathway
104686517 (SHH)
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
ccw01002
]
104686517 (SHH)
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
ccw00536
]
104686517 (SHH)
Peptidases and inhibitors [BR:
ccw01002
]
Cysteine peptidases
Family C46: hedgehog family
104686517 (SHH)
Glycosaminoglycan binding proteins [BR:
ccw00536
]
Heparan sulfate / Heparin
Morphogens
104686517 (SHH)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
HH_signal
Hint
Peptidase_M15_3
DrmE_C
VldE
Vint
Ribosomal_S6e
Motif
Other DBs
NCBI-GeneID:
104686517
NCBI-ProteinID:
XP_019138685
LinkDB
All DBs
Position
2
Genome browser
AA seq
425 aa
AA seq
DB search
MDEMLLLTRILLVGFICALLVSSGLTCGPGRGIGKRRHPKKLTPLAYKQFIPNVAEKTLG
ASGRYEGKITRNSERFKELTPNYNPDIIFKDEENTGADRLMTQRCKDKLNALAISVMNQW
PGVKLRVTEGWDEDGHHSEESLHYEGRAVDITTSDRDRSKYGMLARLAVEAGFDWVYYES
KAHIHCSVKAENSVAAKSGGCFPGSATVHLEQGGTKLVKDLRPGDRVLVADTEGRLLYSD
FLTFLDREDGSHKLFYVIETRQPRARLLLTAAHLLFVAPQQNQSQDGAASSRALFASRVR
PGQRVFVLGDGGRRLLLAAVHRVSLREEASGAYAPLTAQGTILIDRVLASCYAVIEEHSW
AHWAFAPFRLLQAVLAALCPSAVGAPMGEPPTPGIHWYSRLLYRIGSWVLDSDSLHPLGM
VVSSS
NT seq
1278 nt
NT seq
+upstream
nt +downstream
nt
atggacgaaatgctgctgttgacaagaattctcttggtgggcttcatctgcgctctttta
gtctcctctgggctgacttgtggaccaggcaggggcattggaaaaaggagacaccccaaa
aagctgacccctttagcctataagcagtttattcccaatgtggcagagaagaccctaggg
gccagtggaagatatgaagggaagatcacaagaaactccgagagatttaaagaactaacc
ccaaattacaaccctgacattatttttaaggatgaagagaacacgggagctgacagactg
atgactcagcgctgcaaggacaaactgaacgccttggcgatctctgtgatgaaccagtgg
cccggggtaaagctgcgggttaccgagggctgggacgaggacggccaccactccgaggag
tccctgcactacgagggccgcgccgtggacatcaccacctcggaccgggaccgcagcaag
tacggcatgctggcccgcctggctgtcgaggctggtttcgactgggtctactacgagtcc
aaggcgcacatccactgctccgtcaaagcagaaaactcagtggcggccaaatctgggggc
tgcttccctggctcggccacggtgcacctggagcaaggcgggaccaagctggtgaaggac
ctgaggccaggagacagggtgctggtggccgacacggagggccgtctgctctacagcgac
ttcctcaccttcctcgaccgggaggacggctcccacaagctcttctacgtcatcgagacc
cggcagccccgggcccggctgctgctgacggccgcccacctccttttcgtggccccccag
cagaaccagtcgcaggacggggccgccagcagccgggcgctgttcgccagccgcgtgcgg
ccgggccagcgggtcttcgtgctgggcgatggcgggcggcggctgctgctggcggccgtg
caccgcgtgtcgctgcgggaggaggcctcgggcgcctacgccccgctcactgcccagggc
accatcctcatcgaccgcgtgctggcctcgtgctacgccgtcatcgaggagcacagctgg
gcacactgggccttcgctcccttccgcctgctccaggccgtgctggccgcgctctgcccc
tccgcagtgggcgccccgatgggagagccgccgacccccggcatccactggtactctcgg
ctcctctaccgcatcggcagctgggtgctggatagtgactctctgcacccgctgggcatg
gtggtgtcatccagctga
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