Corvus cornix (hooded crow): 104687307
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Entry
104687307 CDS
T03546
Symbol
THOC1
Name
(RefSeq) THO complex subunit 1 isoform X2
KO
K12878
THO complex subunit 1
Organism
ccw
Corvus cornix (hooded crow)
Pathway
ccw03013
Nucleocytoplasmic transport
ccw03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ccw00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
104687307 (THOC1)
09122 Translation
03013 Nucleocytoplasmic transport
104687307 (THOC1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ccw03019
]
104687307 (THOC1)
03041 Spliceosome [BR:
ccw03041
]
104687307 (THOC1)
Messenger RNA biogenesis [BR:
ccw03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
TREX complex
104687307 (THOC1)
Spliceosome [BR:
ccw03041
]
Complex C
Other components
EJC/TREX
104687307 (THOC1)
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
104687307 (THOC1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
efThoc1
Death
bDLD3
Motif
Other DBs
NCBI-GeneID:
104687307
NCBI-ProteinID:
XP_010394667
LinkDB
All DBs
Position
2:105727194..105747274
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AA seq
656 aa
AA seq
DB search
MSPPLFSLPEARLRFTTSTREALINKSIKPLLNAFNQVPGSENEKKCTLDQAFRVVVEEE
IINKAPCENLLAIISLAINGVTEGICTASTPFVLLGDVLDCLPLDQCDKIFTFVEKNVAT
WKSNTFYSAGKNYLLRMCNDLLRRLSKSQNTVFCGRIQLFLARLFPLSEKSGLNLQSQFN
LENVTVFNTNEHESTLGQKHTEEREEGMDVEEGEMGDDEAPTSCSIPIDYNLYRKFWSLQ
DYFRNPVQCYEKVSWKTFLKYSEEVLAVFKSYKLDDTQASRKKLEELKTGGEHVYFAKFL
TSEKLMDLQLSDSNFRRHILLQYLILFQYLKGQVKFKSSNYVLTDEQSLWIEDTTKAVYQ
LLSENPPDGERFSKMVEHILNTEENWNSWKNEGCPSFVKERPPDSKPMRPVRKRPAPEDF
LGKGSNKKILMGNEELTRLWNLCPDNMEACKSESREYMPTLEEFFEEAIEQADPENMVEN
KYKAVNNSNYGWRALRLLARRSPHFFQPTNQQFKSLPEYLENMVIKLAKELPPPSEEIKT
GEDEDEEDNDALLKENNESPEVQRDKAMTGEQIESFANRLGEQWKALAPYLEMKESDIRQ
IELDSEDVKMRAKQLLVAWQDQEGAHATPENLITALSKAGLGDLAESLTNDTEGSS
NT seq
1971 nt
NT seq
+upstream
nt +downstream
nt
atgtcgccgccgctcttcagcctgcccgaggcgcggctccgcttcacgacatccaccaga
gaggctctgattaacaaaagcatcaagccgctgttgaatgcatttaaccaggttcctggg
agtgaaaatgaaaagaagtgtaccttggatcaagcttttagagttgttgtagaagaagaa
ataataaacaaagctccatgtgaaaatctcctggcaattatttctcttgctattaatgga
gtcacagaaggtatctgcactgcatcaactccttttgtgcttttgggggatgttctggat
tgcctacctttggatcagtgtgacaaaattttcacttttgtggagaaaaatgttgctacg
tggaaatcgaacacattttactctgcagggaaaaattacttgctacgcatgtgcaatgac
ctcttaagaagattatctaagtcacaaaacacagtcttttgtggaagaattcagctcttc
ttggctcggttatttccactttcagaaaagtcagggcttaacctacagagtcagtttaac
ctggaaaatgtcactgtgttcaataccaatgaacatgagagcactctgggacagaagcac
accgaggagagggaagaaggaatggatgtagaagaaggtgaaatgggagatgatgaagca
ccaacaagttgttccattccaatagattataacctgtatagaaaattctggtcacttcaa
gattattttagaaatcctgtgcagtgctacgagaaggtgtcatggaaaactttccttaag
tactcagaagaggttttggctgttttcaaaagttataaactggatgacactcaggcttcc
cgaaaaaagttggaagaactaaaaacaggaggagaacatgtatattttgcaaagttccta
actagtgaaaagctgatggatttacagctgagtgacagtaacttccgccgtcacatcttg
ttgcagtacctaatactgtttcagtatctaaagggacaagtcaaatttaaaagttcaaac
tatgttctaacagatgaacagtctctttggattgaagatactacaaaagcagtttatcag
cttctttcagaaaatcctccagatggggaaaggttctcaaaaatggtagagcatatatta
aatactgaagaaaactggaactcgtggaaaaatgagggctgccccagctttgtgaaagaa
agacctcctgattctaagccaatgaggcctgtgagaaagaggccagctccagaggacttc
ttaggaaaaggatccaacaaaaaaatcctaatggggaatgaggaactgacccgcctttgg
aatttatgtcctgataacatggaagcctgtaaatctgagagtagggaatatatgccaaca
ctggaggaattttttgaagaagctattgaacaagcagaccctgaaaacatggtggaaaat
aagtataaggctgtgaacaattctaactatggctggagagcactgagacttctggcacgc
agaagtccccacttcttccagccaacaaaccaacaattcaagagtttacctgaatatcta
gaaaacatggtaatcaaattagccaaggagctgcctcctccttctgaagaaataaaaaca
ggtgaagatgaagatgaggaagataatgatgctttattaaaggaaaacaatgaaagtcca
gaggtgcaacgggacaaagccatgacgggcgagcagatcgagtcctttgcgaacaggctg
ggggagcagtggaaggccttggccccctacttggagatgaaggaatctgatatacggcag
attgagctggacagcgaggatgtgaagatgagagcgaagcagctgctggtggcctggcag
gatcaggagggtgctcacgccacccctgagaacctgatcacggcactgagcaaagccggg
cttggggacctggccgaaagcctcaccaacgacaccgagggcagcagctaa
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