Corvus cornix (hooded crow): 104687312
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Entry
104687312 CDS
T03546
Symbol
SIX4
Name
(RefSeq) homeobox protein SIX4
KO
K15615
homeobox protein SIX4
Organism
ccw
Corvus cornix (hooded crow)
Brite
KEGG Orthology (KO) [BR:
ccw00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ccw03000
]
104687312 (SIX4)
Transcription factors [BR:
ccw03000
]
Eukaryotic type
Helix-turn-helix
Homeo domain SINE
104687312 (SIX4)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SIX1_SD
Homeodomain
Homeobox_KN
HTH_TSHZ3
Motif
Other DBs
NCBI-GeneID:
104687312
NCBI-ProteinID:
XP_039407720
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Position
5:complement(5340262..5351474)
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AA seq
773 aa
AA seq
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MSSASPAADDIVIAVEIKEENVMEMLSEAPDGPAPPPPPAAAPFPMEHAGSAAAGEEGAA
EQVLLHTELLARNHHAASSPSSSSSSSSSSSSSQTPLAFSPDHVACVCEALQQGGNLDRL
ARFLWSLPPSDLLRGNESLMKARALVAFHQGIYAELYSILESHNFDSSNHPLLQELWYKA
RYTEAERARGRPLGAVDKYRLRRKYPLPRTIWDGEETVYCFKEKSRNALKELYKQNRYPS
PAEKRNLAKITGLSLTQVSNWFKNRRQRDRNPSETQSKSESDGNPSTEDESSKGREDLSP
HPLSSSSDGVTSLSLPSHMEPVYMQQLGNTKIALSSSGVLLNGNLMPASTSPVFLNGSSF
LQGPNGVILNGLSVGTSQTVTLNSPKTASSVVSNGVSITDILSSSSSEDVKDFKLLQASV
PNATAAFSPSNIPVTFPGLIPSSEVKREGVETAASQDGGSVVTFTAPVQINQYGIVQIPN
SGTNGQLLNGSIGFSSLQLPPVSVAASQGNVSVNPSTSDGGTFTTESSTVQQGKVFFSPL
APSAVVYTVPNSGQAVGSVKQEGLERSLVFSQLMPVSQNMQLNVNMSSENISSAGLQSLA
SSLVNVTPSHNFSLTPPTLLNAAELSSGISESQSMSSPVTSTSTVISISNTNYATLQNCP
LITSQDLLSISTAQPVLGEIVSTSGDRVSHPPAQVHQDFGREHRLVLQAVPDVKENFLPN
SESKSTGNLLMLDSKSKYVMSNMVDSVCEELETDKKELAKLQTVQMDEVMQDL
NT seq
2322 nt
NT seq
+upstream
nt +downstream
nt
atgtcttctgcctcccccgccgcggacgacatcgtgatcgccgtagagatcaaggaggaa
aatgtgatggaaatgctctccgaagcccccgacgggcccgcgccgccgccccctcccgcc
gctgccccgttccccatggagcacgcaggctccgccgccgctggcgaggagggagccgcg
gaacaggtactgctccatacggaactcctggccaggaatcaccacgctgcctcctctccc
tcctcttcatcatcttcttcctcctcctcctcctcctcgcagacccccctggctttctcc
ccggatcacgtcgcctgcgtgtgcgaggcgctgcagcaaggtgggaacctggaccgcctg
gccaggttcctgtggtctttgcccccgagcgatctgctacgtggcaacgagagcctgatg
aaagcccgggcgctggtggctttccaccagggcatctacgccgagctctatagcatcctg
gagagccacaacttcgactcctccaaccacccgctgctgcaggagctctggtacaaggct
cgctacaccgaggcggagcgagcccggggcagacccttgggggcggtggacaagtacagg
ttgcgaaggaaataccccctgcccaggaccatctgggacggcgaggagacggtctactgc
ttcaaggagaagtcccgcaacgcgctgaaggagctctacaagcagaaccgatacccctcg
cccgccgagaagcgcaacctggccaagatcaccgggctgtccctcacccaggtcagcaac
tggttcaagaaccgcaggcagcgggaccgcaacccttccgagacccagtccaaaagcgag
tcagatggcaaccctagcacagaagacgaatccagtaaggggcgagaggatttatctccc
catccactctccagctcatccgacggcgttaccagcctcagccttcccagccacatggag
cctgtctacatgcagcagcttggaaacactaaaatagccttgagctcatctggtgtcttg
ttgaatgggaacctcatgcctgccagtacctctcctgtcttcctcaatggtagctcgttt
cttcagggacccaatggcgtcatactcaatggactcagcgtgggcacttcacaaactgtt
accttaaattctcccaaaactgcatcgagtgtcgtgagcaatggggtgtccatcactgac
atactgtcgtcatcatcgtcagaagatgttaaagacttcaaactccttcaggcttcagtc
cccaatgccacagcagccttcagccctagcaacatcccggtcactttcccaggattgata
ccgagctcggaggtgaaaagggaaggcgtagaaactgctgcttcccaggatggaggctct
gtagttacttttactgctcctgtccaaataaaccagtatggcattgtccagatccccaat
tcaggaacaaatggccagctgctgaacggaagcattggtttttcttctctgcagctgcct
cctgtttctgtggcagcttcacaaggtaatgtttcagtaaatcccagcacatctgatgga
ggaacttttacaactgaatcttcaacagtgcagcaaggaaaggttttcttcagccccctc
gctccgagtgcagtggtttatacagttcccaattcaggccaggcagtaggatctgtcaag
caagaaggactggaaagaagcctggtgttttctcagttgatgccagtcagtcagaacatg
caactgaacgtcaacatgtcttctgaaaatatatccagcgcaggactccagtccctggcc
tcctcattagtgaatgtaacgccctcacataatttttccctcacaccaccaactctttta
aatgctgcagaactgagctctggtatctcggagagccagtccatgtcatcgcccgtgacc
agtacctctacagtgatatctatcagcaacactaactatgcaaccctgcagaactgtccc
ctcatcaccagtcaggatctgttgtccatttccacagcacagcccgtgcttggagaaata
gtttcgacaagtggagaccgtgtcagccacccccctgcacaagtgcaccaggattttggc
agagagcacaggttagttctgcaagccgtacccgatgtcaaagagaatttcttacctaat
tctgagagtaaatcaactggcaatttactgatgctggattccaaatctaagtatgttatg
agtaacatggttgactcggtatgtgaagaactggaaacggacaaaaaagaacttgccaaa
ctgcagacagttcagatggatgaagttatgcaagacttgtaa
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