Corvus cornix (hooded crow): 104687632
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Entry
104687632 CDS
T03546
Symbol
SYCP2
Name
(RefSeq) synaptonemal complex protein 2 isoform X1
KO
K19529
synaptonemal complex protein 2
Organism
ccw
Corvus cornix (hooded crow)
Brite
KEGG Orthology (KO) [BR:
ccw00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
ccw03036
]
104687632 (SYCP2)
Chromosome and associated proteins [BR:
ccw03036
]
Eukaryotic type
Meiosis-specific proteins
Synaptonemal complex
104687632 (SYCP2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SYCP2_ARLD
SYCP2_SLD
Shugoshin_C
Motif
Other DBs
NCBI-GeneID:
104687632
NCBI-ProteinID:
XP_019139942
LinkDB
All DBs
Position
20:10996682..11021591
Genome browser
AA seq
1465 aa
AA seq
DB search
MPARNELQFEKLIDEATRKKDFQSLEQFLATDECENVSHKCSKQFANKLDKLLCWALDKQ
EVRSISILLNAIQKCAKKISIAGEDGLPAMIKHGLVGRMVHWFEKLKGILVLRGDEKNEM
LTSLAEDFFIMLLAVCDSRPEGKMQILENFVLRTCSLITDARINIYVQQEVIKKLNLLLD
KIPRDARKKILSTKEMLLVMSEMGRTILDAGDYDTQVAITEALCRMVAEKQRGELASQWF
PMEFVATAFRGIKDSEFETDCRKFLNQVNGMLGDKRRVFSYPCLTAALDKYELQIPLDEN
LEAFWIDFNVGSRSISFYVAAEDAELQWETVLIREDDVNMYSLEEKGSRKLLTIDLKSPM
NVGTLEGGKFLLYFDSILEIKDVTRKIYGSRKCKDFSKKQSSSIAETTVHIVFDESGSQV
LVPESQLSPGLKEKSGEEEEKLSKYKTQQPPGSLRTQSKNNSQEKPRGDSSKITPSHKRK
VSEASVLIPGTTGASTRSPLGFVSTSTPFKGRFKLPLEMTSSTKRSDNDAINESRTKNFY
QEPPGQMCSEEVLKILQEATEKQTLDEVLDIVPDSQPAGRSNKPLLPGLLATSFDKTEPW
KKRTFPLPEKNITTGDEQKPNPSRACASHPARVSDTSLHTHLAQEDPDVLLRKETSNPKQ
SKTKPKSKEMADAAKSLISKISDRYKDKSDEKSKARDSLGFNRTHLNKSWLSKEEVQERT
LKTTSFLNITAGHVLDDVYNFNISGFDEPTIKLGIQELRVTELSVHTETNKKGNTTTSKS
SAEVKGGKKSRSNRDKKHLFSDSDTENRGDDSKTEISWLEESKRKPKAQIIDYSRNKKSG
KPISTDKTGKFSEPACHVDKPKSKNTNKKKTNKCKPQNSKTDEMIVKSTRKKLPRRAAAT
KNYKEPSSSESESEEKIPTCTSKEKKSKIQKHMNGANKDYRWPKVLQIVPVEPKRVDSYV
QKALVKSRNSAEQKEVEMPSAESPASLETMRCADRVSGDVTPEHSSSERSLGLQESTLED
REMLNSEKEISPSDFCPQNKSMQSLGVSQSPERAVTKVTLGRKSFSPVLTEASLLSLTTY
KTVSGKNSKGAAPETCNNNEDSGFQRCFSDTFSVKGMLQDITKPIPKNKEELSLTTYKTD
SGKHAKGAVLETGNDNEDSSLQSCFSDTLSAKDKLQDPTKPLTKSKEDCVPPSPLSASSR
SRVQSWIQEPYVPMDESGPSAQTYLKRTYHSDTESNSDEAETSKEEKKGRRRISLKPKKL
FKTDDAATYRVSESVSTQSVNDPCGLDGEFWEHGCSTISICQQLQKEFTKKIENRSRKMD
NFNKQTLRAAHQHLATMSYQLHECRIRQLDKFHFTLTEELEKFEKDSQSLKIMEKEFLAF
WKKHSHTFSTYMKNEQQRIQILKASFEKSIYHSVDYEENVFTSEMHLMKEDIKGLQDKFL
KEMQEEELCNVRRGLQALFQSKAEF
NT seq
4398 nt
NT seq
+upstream
nt +downstream
nt
atgccagccaggaatgagttgcagtttgaaaagttaattgacgaagctacaagaaaaaag
gatttccaatccttagaacaatttctggccacagatgaatgtgaaaatgtctctcacaaa
tgcagcaaacagtttgccaacaaattggacaagcttctctgttgggcacttgacaaacaa
gaagtcagaagcatttctattttactaaatgctattcagaaatgtgcgaaaaaaatcagc
atagcaggagaagatggactcccagcaatgataaaacacggtcttgttggaaggatggtc
cattggtttgaaaagttaaaaggaattttggtcctcagaggagatgaaaagaatgaaatg
cttacaagtctggctgaagatttcttcatcatgttgctggctgtgtgtgatagcagacct
gaaggtaaaatgcaaatattagaaaactttgttctgagaacatgttccctcatcactgat
gcaagaattaatatttatgttcagcaggaggtaataaaaaaactgaatttattgcttgac
aagatccctcgagatgccaggaaaaagatactttctacaaaggagatgttacttgtcatg
agtgaaatggggaggacaattttggatgctggagattatgacacacaagtggccatcaca
gaagctctgtgcagaatggtggcagagaagcaaaggggagaactggcctcgcagtggttt
cccatggagtttgtggccactgcatttagaggaattaaagattcggagtttgagacagat
tgcagaaaatttcttaaccaggtgaatggcatgcttggagacaaaagaagggttttttca
tatccatgtctaacagcagctcttgataaatatgagctccagataccactggatgaaaac
ctggaagcattttggattgatttcaatgttggcagcagaagtatttctttctacgtggca
gcagaggatgcagagcttcagtgggaaaccgtccttatacgagaagatgatgtaaacatg
tacagcctggaagaaaaaggttcaaggaaattattaacaatagatctaaaaagcccaatg
aatgtgggcactcttgaaggagggaaatttcttttatattttgattctatcttggaaatc
aaagatgtgaccagaaagatttacggatctcgtaaatgtaaggatttcagcaaaaagcag
tcttcatcaatagccgaaacaactgttcacatcgtctttgatgaaagtggatcccaggtt
ctggtaccagaaagtcaattgtcaccgggtttgaaagaaaaatctggagaggaggaggag
aaactcagtaagtacaaaactcagcaacctcctggaagtttgaggactcagagtaaaaat
aacagtcaagaaaaacccagaggtgattcctccaagataactccatctcataaaaggaaa
gtgtctgaagcatctgtgcttattcctggaactacaggagcttccacaaggagtccactg
ggttttgttagcacatccactccttttaaagggagatttaaattgcctttggaaatgacc
agctctactaaaaggtctgacaatgatgcaataaatgagagcagaacaaagaatttctat
caggaacctcctggacaaatgtgttctgaagaagttttaaaaattttacaagaggccaca
gaaaagcaaactttagatgaagtgctagatattgttcctgattctcagccagctgggaga
agcaacaaacctttgctgcctggtcttttggcgacttcttttgataaaactgagccatgg
aagaaaagaacgttccctcttcctgagaagaatataacaactggggacgagcaaaagcca
aatccatcacgagcatgtgcatcccatccagccagagtgtctgacacatctttgcatact
catcttgcacaagaggaccctgatgttctcctcagaaaagagacttcaaatccaaaacag
tcaaagacaaaaccaaagtctaaagaaatggcagatgcagccaaatcactgatcagtaaa
atcagtgaccgatacaaagacaagagtgatgagaaaagcaaagcaagagattccctgggc
tttaacaggacacatttaaataaatcctggctctccaaggaagaagttcaggagaggacc
ctaaaaaccacttcttttcttaatataactgctggtcatgttctggatgatgtctacaac
tttaacatcagtgggtttgatgagcctacaataaagcttggaatccaagaattgcgtgtg
actgaactgagtgttcatacagagacaaacaaaaaagggaacacaaccaccagtaaatcc
agtgcggaagtgaaaggaggaaaaaagagtaggagcaatcgagacaagaagcatctcttt
agtgactcagacacagaaaacagaggggatgacagcaagacagagatcagttggctggag
gaatccaagagaaaacctaaagcccagataattgattacagtagaaataaaaaatcaggg
aaaccaataagcacagacaaaacaggtaaattctcggaacctgcttgccacgtggataaa
cctaaaagcaaaaatacaaataagaaaaagacaaacaaatgtaaaccccagaattcaaaa
acggatgaaatgatagtaaaatccaccagaaaaaaactccctcgaagagcagcagcaaca
aaaaattacaaagagccgtccagttctgagtctgagagtgaagaaaagattccaacgtgc
acctctaaggagaagaaatccaaaatacagaaacatatgaatggtgcaaacaaggattac
aggtggccaaaggtactgcagattgtacctgtggagccaaagagagtggatagctatgtg
cagaaagcactggtcaaatccaggaattctgcagaacagaaggaagtggaaatgccttca
gctgagagccctgcctcgcttgagacaatgagatgtgctgacagagtgtcaggagatgtt
actccagagcacagttccagtgagaggtcacttggtcttcaggagtcgacactagaagac
agggaaatgctaaactctgagaaagaaatctctcccagtgatttctgtccacaaaataag
agtatgcaaagtctgggtgtaagtcagtcccctgagagagcagttacaaaggtgacattg
ggaaggaaaagcttctcaccagttttaactgaagcatctttgctcagcttaaccacatat
aaaactgtcagtggcaaaaattccaagggagctgcaccagaaacctgtaacaataatgaa
gattcaggtttccaacgttgcttttcggacacgttttctgttaaaggaatgcttcaggat
atcactaaacctatccccaaaaataaggaagagctcagcttaacaacgtataaaactgac
agtggaaaacatgcaaagggagctgtgctggaaacagggaatgacaatgaagattccagt
ctccagtcttgcttttcagacacactttctgctaaagacaaactccaggatcccaccaag
cctctcactaaaagtaaagaggattgtgtaccaccatctccattgtctgcttccagcagg
agtagagtacagtcttggattcaagaaccttatgtccccatggatgagtcaggaccgagt
gcacagacatacctcaaaagaacttaccacagtgacacagaaagcaactctgatgaggca
gaaacaagcaaagaggaaaagaaaggaaggagaagaataagtttaaagccaaaaaaatta
tttaaaacagatgatgctgctacttacagagtgtctgaaagtgtctccactcagtctgta
aatgacccgtgtggtttggatggggaattctgggagcatggttgctcaaccatcagcatt
tgtcagcagctccagaaagaatttaccaagaaaattgagaaccgctcccggaaaatggat
aattttaataagcaaacactgagagctgcccatcagcatttggcaacaatgagttaccaa
ctccatgaatgcaggatcaggcagctggacaaatttcattttactctcactgaagaactt
gagaaatttgaaaaggattctcaatccctgaaaatcatggaaaaagaattcttggccttt
tggaaaaagcattcccacacttttagtacgtacatgaaaaatgagcagcagagaattcag
attcttaaagcttcatttgaaaagagtatctaccattctgttgactatgaagaaaatgtt
tttacttcagagatgcatctgatgaaagaagacataaaaggactccaagacaaatttcta
aaagaaatgcaagaagaggagctgtgtaatgttcgccgaggattgcaggccttgtttcaa
tcaaaggcagaattctga
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