Corvus cornix (hooded crow): 104687825
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Entry
104687825 CDS
T03546
Symbol
PRPF6
Name
(RefSeq) pre-mRNA-processing factor 6
KO
K12855
pre-mRNA-processing factor 6
Organism
ccw
Corvus cornix (hooded crow)
Pathway
ccw03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ccw00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
104687825 (PRPF6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ccw03041
]
104687825 (PRPF6)
Spliceosome [BR:
ccw03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
104687825 (PRPF6)
Complex C
U5 SnRNP specific factors
104687825 (PRPF6)
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
PRP1_N
TPR_14
TPR_19
TPR_16
Suf
TPR_17
TPR_2
TPR_8
FAT
TPR_1
T7SS_EccA1_N
TPR_21
MUM1-like_PWWP
Motif
Other DBs
NCBI-GeneID:
104687825
NCBI-ProteinID:
XP_039419442
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All DBs
Position
20:8164809..8189537
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AA seq
941 aa
AA seq
DB search
MNKKKKPFLGMPAPLGYVPGLGRGATGFTTRSDIGPARDANDPVDDRHAPPGKRTVGDQM
KKNQTADDDDEDLNDTNYDEFNGYAGSLFSSGPYEKDDEEADAIYAALDKRMDERRKERR
EQREKEEIEKYRMERPKIQQQFSDLKRKLAEVTEEEWLSIPEVGDARNKRQRNPRYEKLT
PVPDSFFAKHLQSGENHTSVDPRQTQFGGLNTPYPGGLNTPYPGGMTPGLMTPGTGELDM
RKIGQARNTLMDMRLSQVSDSVSGQTVVDPKGYLTDLNSMIPTHGGDINDIKKARLLLKS
VRETNPHHPPAWIASARLEEVTGKLQVARNLIMKGTEMCPKSEDVWLEAARLQPGDTAKA
VVAQAVRHLPQSVRIYIRAAELETDIRAKKRVLRKALEHVPNSVRLWKAAVELEEPEDAR
IMLSRAVECCPTSVELWLALARLETYENARKVLNKARENIPTDRHIWITAAKLEEANGNT
QMVEKIIDRAITSLRANGVEINREQWIQDAEECDKAGSVATCQAIMRAVIGIGIEEEDRK
HTWMEDADSCVAHNALECARAIYAYALQVFPSKKSVWLRAAYFEKNHGTRESLEALLQRA
VAHCPKAEVLWLMGAKSKWLAGDVPAARSILALAFQANPNSEEIWLAAVKLESENNEYER
ARRLLAKARSSAPTARVFMKSVKLEWVLGNIAAAQELCEEALKHYEDFPKLWMMKGQIEE
QKELVEKAREAYNQGLKKCPHSIPLWLLLSRLEEKVGQLTRARAILEKSRLKNPKNPDLW
LESVRLEYRAGLKNIANTLMAKALQECPNSGILWSEAIFLEARPQRKTKSVDALKKCEHD
PHVLLAVAKLFWSERKITKAREWFHRTVKIDSDLGDAWAFFYKFELQHGTEEQQEEVRKR
CENAEPRHGELWCDVSKDIENWQKKIGEILVLVAAKLKNTF
NT seq
2826 nt
NT seq
+upstream
nt +downstream
nt
atgaacaagaaaaagaagccgttcttgggcatgcccgcgcccctgggctacgtgccgggg
ctgggccgcggagccacaggtttcaccacccgctctgatattggccctgcccgcgatgcc
aacgaccccgtggatgaccggcatgccccgccggggaagagaactgtgggggaccagatg
aagaagaaccagacagcagatgatgatgatgaggacttgaatgacactaactacgatgag
ttcaatggttatgctgggagcctgttctccagtggcccctatgaaaaagatgatgaggaa
gcagatgctatttatgcagctttggataagaggatggatgaacgcaggaaagaaaggagg
gaacaacgagaaaaagaggaaatagaaaaataccgtatggaacgacccaaaattcagcag
cagttctcagacttgaaacggaaattagcagaggttactgaggaggagtggctgagtatt
cccgaggttggggatgccaggaacaagcggcagaggaatcctcgttatgagaagctgact
cccgtccccgacagcttctttgcaaagcatttgcagtcaggggagaatcacacttctgtg
gacccacgccagacacaatttggtggactgaatactccgtatccagggggtttgaatact
ccatacccaggaggaatgacaccaggcttgatgacacctggaacaggtgaattggatatg
aggaagattggccaagccaggaacaccttgatggatatgaggctaagccaggtgtcggac
tccgtgagcggccagaccgtagtggacccgaaaggatatttgacagacttaaattccatg
attcccacacatggaggagatatcaatgatatcaaaaaagcccgtttgctcctgaaatct
gtccgagagaccaatcctcatcatccaccagcctggatagcatcagcccgactggaggag
gtcactggcaagctccaggtggctcgaaacctcatcatgaaaggaacagagatgtgccct
aagagtgaagatgtttggttggaagctgctcggcttcagcctggagatacagccaaggct
gttgtggcccaggctgtccggcaccttccacagtctgtgcggatctatatcagagcagca
gagctggagacagacatccgtgccaagaaacgtgtccttaggaaagcccttgagcatgtt
ccaaactcagtgcgtttgtggaaagcagccgtggagctggaggaacctgaggatgccagg
atcatgctgagccgggctgtggagtgctgtccaaccagtgttgaactgtggctggcgctg
gcaaggctggagacatatgagaacgctcgtaaagtccttaacaaagcccgggagaatatc
ccgacggatcgtcacatctggattactgctgccaaactggaggaagccaatggaaacacc
cagatggtggagaaaatcattgacagagccatcacatctcttagggctaatggtgtggaa
atcaacagggagcagtggatacaggatgccgaggaatgtgataaagctggaagtgtggcc
acatgccaggcaatcatgagagctgtgattgggattgggatcgaggaagaagatcggaaa
cacacctggatggaagatgcagacagttgtgttgctcataatgccctggagtgtgcccga
gccatttatgcctatgccttgcaagtcttcccgagcaagaagagtgtgtggctacgagca
gcctattttgaaaagaaccatggaaccagagaatccttggaggctcttttgcagagggct
gttgctcactgtcccaaagcagaagtgctgtggctcatgggagccaaatccaagtggttg
gcaggagatgtgccagcagccagaagcatcttggccctggctttccaggccaaccccaac
agcgaggagatctggctggctgccgtgaagctcgagtcggagaacaatgagtatgaaaga
gcgaggaggctgctggcaaaggctcgcagcagtgcccccacagcaagggtcttcatgaag
tctgtgaagttggaatgggtgcttgggaacattgctgcagcccaggagctctgtgaggaa
gccctgaagcactatgaggacttccccaaactgtggatgatgaaaggacaaattgaggaa
caaaaagagctggtagagaaagcacgggaggcttataatcaagggttgaagaagtgcccc
cattccatacccctgtggcttttgctgtccaggctggaggagaaagtcgggcagctgact
agagcaagagccatcttggaaaagtctcgcctgaagaatccaaagaatccagatctctgg
ttggagtctgtgagattggaataccgagctgggctgaagaacattgcaaacacactgatg
gccaaggcactgcaagagtgccccaattcaggaatcctgtggtcagaagcaattttcctt
gaagcgcgaccgcaacgaaagaccaagagtgtggatgctctcaagaagtgtgaacatgac
ccacatgtcctgctggctgtggccaagctgttctggagcgagcgtaaaataaccaaggcc
agagagtggttccaccggacggtgaagatagactctgacctgggggatgcctgggccttc
ttttacaaatttgagctccagcatggcacagaggaacaacaagaagaggtgaggaagcgc
tgtgagaatgccgaacctcgccacggagagctctggtgtgatgtctccaaggacatagag
aattggcagaagaagattggggagattctcgtgcttgtggcagccaagctgaaaaatacc
ttctag
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