KEGG   Corvus cornix (hooded crow): 104687995
Entry
104687995         CDS       T03546                                 
Symbol
RFC4
Name
(RefSeq) replication factor C subunit 4
  KO
K10755  replication factor C subunit 2/4
Organism
ccw  Corvus cornix (hooded crow)
Pathway
ccw03030  DNA replication
ccw03410  Base excision repair
ccw03420  Nucleotide excision repair
ccw03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:ccw00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    104687995 (RFC4)
   03410 Base excision repair
    104687995 (RFC4)
   03420 Nucleotide excision repair
    104687995 (RFC4)
   03430 Mismatch repair
    104687995 (RFC4)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:ccw03032]
    104687995 (RFC4)
   03036 Chromosome and associated proteins [BR:ccw03036]
    104687995 (RFC4)
   03400 DNA repair and recombination proteins [BR:ccw03400]
    104687995 (RFC4)
DNA replication proteins [BR:ccw03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   RFC (replication factor C)
    104687995 (RFC4)
  DNA Replication Termination Factors
   ELG1-RFC complex
    104687995 (RFC4)
Chromosome and associated proteins [BR:ccw03036]
 Eukaryotic type
  Sister chromatid cohesion proteins
   CTF18-RFC complex
    104687995 (RFC4)
DNA repair and recombination proteins [BR:ccw03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    RFC (replication factor C)
     104687995 (RFC4)
  Check point factors
   HRAD17(Rad24)-RFC complex
    104687995 (RFC4)
SSDB
Motif
Pfam: Rep_fac_C AAA DNA_pol3_delta2 RCF1-5-like_lid AAA_assoc_2 Rad17 AAA_16 AAA_30 AAA_22 AAA_11 AAA_24 Mg_chelatase DUF815 SLFN-g3_helicase AAA_14 RuvB_N AAA_19 AAA_5 DNAX_ATPase_lid TIP49_C AAA_28 AAA_23 ResIII AAA_7
Other DBs
NCBI-GeneID: 104687995
NCBI-ProteinID: XP_010395598
LinkDB
Position
9:8358677..8370859
AA seq 362 aa
MQAFLKGPASKSTKPIAAKEKSAAGSSGEGKRTKPIPWVEKYRPKNVDEVAFQDEVVAVL
KKSLEGADLPNLLFYGPPGTGKTSTILAAARELFGPDLFRQRVLELNASDERGIQVIREK
VKAFAQLTASGSRSDGKMCPPFKIVILDEADSMTSAAQAALRRTMEKESKTTRFCLICNY
ISRIIEPLTSRCSKFRFKPLSDSIQQQRLLDVAEKEHVKISNEAVSYLVKVSDGDLRKAI
TFLQSATRLMGGKEITEKIITEIAGVIPKETIDELLLGCQSGSFEKLETLAKNLINEGFA
VAQLVNQLHDTVVESEDYSDKQKSAIVEKLAEVDKCLADGADEFLQLMSLCALVMQQLTQ
NT
NT seq 1089 nt   +upstreamnt  +downstreamnt
atgcaggccttcctcaagggcccggcctctaaaagcaccaagcccatcgctgccaaggaa
aagagcgcggccgggagcagcggggagggcaagaggaccaaacccatcccctgggtggag
aaatatcgtcccaaaaatgtggatgaagttgccttccaggatgaagttgtagctgtgctg
aagaagtctctggagggtgctgatcttcccaatctgttgttctatggcccacctggaact
ggaaagacttccactattttagcagctgctagagaactgtttgggcctgatttattccgg
caaagagtccttgagttaaatgcttctgatgagcgtgggatacaagtgattcgggaaaaa
gtgaaggcttttgctcagctaacggcatctggaagccgttcagatggtaaaatgtgtcct
ccttttaaaattgtgatcctggatgaagcagactctatgacttcagcagcccaggcagcc
ttaagacgcacaatggaaaaagaatctaaaacaacacgtttctgtcttatttgtaactac
atcagcagaataattgaacctttaacatctcggtgctccaaattccgcttcaagcctttg
tcggacagtatccaacagcagaggctgttggatgttgctgagaaggaacatgtgaaaatc
agtaatgaggcagtatcctaccttgtgaaagtgtcagatggggacttaagaaaagcaatt
acttttcttcaaagtgccactcgcctaatgggtgggaaggagatcacagagaagataatc
actgaaattgctggggtcatccctaaagaaacaattgatgaactgctgttgggctgccag
agtggttcctttgagaaactggaaacgctggcaaagaatctcatcaatgaggggtttgct
gttgctcagcttgtaaaccagctgcacgacacagttgtggagagcgaagattacagcgac
aagcagaaatctgccatagttgagaaacttgcagaagtggacaaatgcctggcagatggt
gctgatgagttcttgcagctgatgagtctctgtgcccttgtgatgcagcagctcacacag
aacacctga

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