Corvus cornix (hooded crow): 104688011
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Entry
104688011 CDS
T03546
Symbol
USP13
Name
(RefSeq) ubiquitin carboxyl-terminal hydrolase 13 isoform X1
KO
K11836
ubiquitin carboxyl-terminal hydrolase 5/13 [EC:
3.4.19.12
]
Organism
ccw
Corvus cornix (hooded crow)
Brite
KEGG Orthology (KO) [BR:
ccw00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
ccw01002
]
104688011 (USP13)
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
ccw04121
]
104688011 (USP13)
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
ccw04147
]
104688011 (USP13)
Enzymes [BR:
ccw01000
]
3. Hydrolases
3.4 Acting on peptide bonds (peptidases)
3.4.19 Omega peptidases
3.4.19.12 ubiquitinyl hydrolase 1
104688011 (USP13)
Peptidases and inhibitors [BR:
ccw01002
]
Cysteine peptidases
Family C19: ubiquitin-specific protease family
104688011 (USP13)
Ubiquitin system [BR:
ccw04121
]
Deubiquitinating enzyme (DUB)
Ubiquitin-specific proteases (UBPs)
UBP/USP
104688011 (USP13)
Exosome [BR:
ccw04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
104688011 (USP13)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UCH
UBA_7
zf-UBP_var
UBA
zf-UBP
UCH_1
UBA_4
UBA_9
Motif
Other DBs
NCBI-GeneID:
104688011
NCBI-ProteinID:
XP_039413237
LinkDB
All DBs
Position
9:7008208..7060392
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AA seq
861 aa
AA seq
DB search
MQRAALFRGGDAQMAAGDLGELLVPYMPTIRVPKSGDRVYKTECAFSYDSPDSEGGLYVC
MNTFLGFGREHIERHYRKTGQCVYLHLKRHLIEKVPGASGGALPKRRNAKLFLDLETSSD
LNSDDFEYEDEAKLIIFPDHYEISLPNIEELPALVTIACDALLSAKSPYRKQEPDSWEEE
LQASKHAKTLVQLDNGVRIPPSGWKCSKCDLRENLWLNLTDGSVLCGKWFFDGSGGNGHA
MEHYKETGYPLAVKLGTITPDGADVYSFDEEEPVLDPHIAKHLAHFGIDMLQMQVTENGL
RDNDIKPRVSEWEVIQEAGVKLKPMYGPGYTGMKNLGNSCYLNAVMQAIFSIPEFQRAYV
GNLPRIFDYSPLDPTQDFNTQMAKLGHGLLSGQYSKPPMKSELIEQVMKEEHKPQHNGIS
PRMFKAFISKGHPEFSSNRQQDAQEFFLHLINLVERNPVGSENPSDVFRFLVEERTQCCQ
SRKVRYTERVDYIMQLPVAMEAATNKDELIAYELKRREAEAARRPLPELVRAKIPFSACL
QAFSEPSNVEDFWSSALQAKSAGVKTSRFASFPEYLVVQIKKFTFGLDWIPKKLDVSIDM
PDFLDISHLRARGLQPGEEELPDIAPPIVIPDDPKDRMTNHFVESLDIDESSVMQLAEMG
FPLEACRKAVYYTGNLGAEVAFNWIIAHMEEPDFAEPLVIPAFGEVASSGAAALGAVGLD
NQPPEEMVAIIISMGFQRNLAIQALKATNNNLERALEWIFSHPDPEEESDPALDTMDMEN
NANANILAETGSEGPRIKDGPGRYELFGFISHMGTSTMSGHYVCHLRKEGRWVIYNDLRV
CASERPPKDLGYIYFYHRIPS
NT seq
2586 nt
NT seq
+upstream
nt +downstream
nt
atgcagcgggccgcgctcttccgcggcggcgatgcgcagatggccgctggggacctgggc
gagctgctcgtcccttacatgcccacgatccgggtgcccaagtcaggggaccgggtctac
aagacggagtgtgccttctcctacgactcgcccgattctgaaggaggtctctatgtgtgc
atgaacacgtttctgggatttggaagggaacacatcgaaaggcattaccggaaaacagga
cagtgtgtgtatctgcatctgaaacgacacctgatagagaaggtaccaggagcatctggt
ggagctttacccaaaaggaggaatgctaagctatttttagatctagagacaagcagtgat
ctcaacagtgatgactttgaatatgaggatgaagcaaaacttattatatttcctgatcac
tatgaaatctcattacccaacatagaagagctaccagcactggtgacgatagcttgtgat
gcactcctcagtgcaaaatcaccctacaggaagcaggaacctgactcctgggaagaagag
ctgcaggcatctaaacatgccaaaacacttgtacagttagacaatggtgttagaattccc
cccagtggttggaagtgctccaagtgtgacctgcgggagaacctgtggctgaacctgacg
gatggttctgtgctgtgcgggaagtggttcttcgacggcagcgggggcaacgggcacgcc
atggagcactacaaggagacaggttatcccctggcagtgaagctgggaaccatcactcct
gatggagcagatgtctattcctttgatgaagaggagccggttttagatccacatatagca
aaacatttggcacactttggaattgatatgctgcagatgcaagtgacagagaatgggcta
agagataatgacataaagccaagagtctcagaatgggaagtgattcaggaagctggcgtg
aaactcaagcccatgtatggcccaggatacactggcatgaagaacctgggaaatagctgc
tacctcaatgctgtcatgcaagccattttcagcatcccagagttccagcgagcgtatgtg
ggaaaccttccacgaatatttgactactcccctcttgatccaacacaagatttcaacact
cagatggctaaattgggacacggcctcctttcaggccaatactctaagcctcccatgaaa
tctgagcttattgagcaggtgatgaaagaagaacacaagcctcaacacaatggaatatct
ccccgaatgttcaaggcttttataagcaaaggccacccagaattttcttctaatagacaa
caagacgcacaggaatttttcctacatcttataaatctagtagagaggaaccctgtgggt
tcagaaaaccccagtgatgttttccggttcctggtggaggagcgcacgcagtgctgccag
tccaggaaggtgcgctacacggagagggtggactacatcatgcagttacctgtggccatg
gaggcagcaacaaacaaagatgaattaattgcctatgaattgaagaggcgagaagcagaa
gctgcaaggagacctctgccagagctggtccgtgccaagatcccatttagtgcatgtctg
caggccttttctgaaccaagcaatgtagaggatttttggagcagtgcccttcaagcaaaa
tctgcaggagttaagacttcccgttttgcttcatttcctgagtacttagtggtgcagata
aagaaattcacttttggccttgactggatacccaaaaagcttgatgtttctatagacatg
ccagatttcctggatatcagccaccttcgggccagggggctccagccaggagaagaggaa
ctcccagacattgctcctcccattgtcattcctgatgacccaaaagatcgcatgacgaac
catttcgtggagtccctagatattgatgagtcctcagttatgcagctggcagagatgggc
tttcctttggaagcatgtcggaaggctgtgtactacacgggcaacctgggtgctgaagtt
gctttcaactggatcattgcacacatggaagaaccagactttgctgagccattggtcata
cctgcatttggagaagttgcttccagtggggcagctgctttaggagctgtagggctagat
aaccagcctcctgaagagatggttgcaattatcatttccatgggattccaaaggaatcta
gcaattcaggcactgaaggcaacaaacaataacttggagcgtgcactggagtggatcttc
agccaccctgaccctgaggaagagagcgaccctgctttggacacgatggatatggagaac
aatgctaatgccaatatccttgcagagacagggtcagagggacccaggatcaaagatggg
cctggaagatatgagctgtttgggttcatcagccacatgggaacatccacaatgagtggc
cactacgtttgtcatctcagaaaggaaggaagatgggtgatctacaacgaccttagagtc
tgtgcctcagaacgacctcccaaagacctgggctacatttacttttaccacaggatacca
agttag
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