Corvus cornix (hooded crow): 104688428
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Entry
104688428 CDS
T03546
Symbol
PRPF4
Name
(RefSeq) U4/U6 small nuclear ribonucleoprotein Prp4
KO
K12662
U4/U6 small nuclear ribonucleoprotein PRP4
Organism
ccw
Corvus cornix (hooded crow)
Pathway
ccw03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ccw00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
104688428 (PRPF4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ccw03041
]
104688428 (PRPF4)
Spliceosome [BR:
ccw03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6 snRNP specific factors
104688428 (PRPF4)
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SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_Prp19
WD40
WD40_CDC20-Fz
WD40_WDHD1_1st
Beta-prop_EML_2
EIF3I
Beta-prop_CAF1B_HIR1
WDR55
Beta-prop_WDR90_POC16_2nd
WD40_MABP1-WDR62_2nd
Beta-prop_TEP1_2nd
Beta-prop_WDR75_1st
ANAPC4_WD40
PRP4
WD40_MABP1-WDR62_1st
Beta-prop_EML
WDR90_beta-prop_4th
NBCH_WD40
Beta-prop_SCAP
Beta-prop_TEP1_C
Beta-prop_DCAF4
Beta-prop_EIPR1
Beta-prop_IFT122_1st
Beta-prop_IFT140_1st
WD_LRWD1
Beta-prop_Vps41
WD40_like
Beta-prop_WDR35_TULP_N
WD40_RFWD3
Beta-prop_WDR19_1st
Beta-prop_WDR11_1st
Motif
Other DBs
NCBI-GeneID:
104688428
NCBI-ProteinID:
XP_039417802
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Position
17:9854639..9863006
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AA seq
529 aa
AA seq
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MATARAPAARGGARPPEPPKPKPAEESDGPPAKRAPIFYGSLEEKERERLAKGESGLLGK
EGMKAAMEAGNINISSGEVFDLEDHMSERQAEVLAEFERRKRARQINVSTDDSEVKACLR
ALGEPITLFGEGPAERRERLRNILSVVGTDALKKTRKDDDRSKKSKEEYQQTWYHEGPRS
LKTARLWLANYSLPRAAKRLEEARLLKEIPEATRTSQRQELHKSLRSLNNFCSQIGDDRP
LSYCHFSPNSKLLATACWSGLCKLWSVPDCNLVHTLRGHSTNVGAVVFHPKATVSLDKKD
VSLASCAADGSVKLWNLESDEPVADIEGHSMRVARVMWHPSGRFLGTTCYDHSWRLWDLE
AQEEILHQEGHSKGVYDIAFHTDGSLAGTGGLDAFGRVWDLRTGRCIMFLEGHLKEIYGI
NFSPNGYHVATGSGDNTCKVWDLRQRKCIYTIPAHQNLVTGVRFEPNHGNFLLTGAYDNT
AKIWTHPGWSPLKTLAGHEGKVMGLDISLDGQLIATCSYDRTFKLWTAE
NT seq
1590 nt
NT seq
+upstream
nt +downstream
nt
atggccaccgcgcgggcaccggctgcgcgaggcggggcccggccccccgagccccccaag
cccaagcctgcagaggagagcgatggacccccagccaagcgggcgcccatcttctacggg
agcctggaggagaaggagcgggagcgcctggccaagggcgagtcggggctgctgggcaag
gaaggcatgaaggctgccatggaggctgggaacatcaacatcagcagcggggaggtgttt
gacctcgaggaccacatgagcgagcgccaggccgaagtgctggcggagttcgagcgccgc
aagcgcgcccggcagatcaacgtctccaccgacgactccgaggtcaaggcctgcctgagg
gccctgggggagcccatcacgctctttggagaggggcctgcggagcgcagggagaggtta
aggaacatcctctccgtggttggcacagatgcgttaaaaaagaccaggaaagatgatgac
aggtcaaaaaagtccaaagaagagtatcagcaaacctggtaccatgagggcccacgcagt
ctgaaaacagccaggctgtggctggccaactactcactccccagggcagcaaagcggctg
gaggaggcccggctgctcaaggagattcccgaggccaccaggacatcccagaggcaggag
ctgcacaaatccctgcggtccttgaataacttctgcagtcagatcggggacgatcgcccg
ctgtcctactgccacttcagccccaactccaaactcctggccacagcctgctggagtggg
ctgtgcaagctctggtctgtgcccgactgcaacctggttcacaccttacgagggcacagc
accaatgtgggggcagtcgtgttccaccccaaggccacggtgtccctggacaagaaggac
gtcagcctggcctcgtgcgccgccgacggctccgtcaaactctggaacctggaaagtgac
gagcctgtggcagacatcgagggacacagcatgagagtggcccgtgtgatgtggcacccg
tccgggaggttcctgggcaccacctgctacgatcactcgtggcgcctgtgggacctggag
gcccaggaggagatcctgcaccaggaggggcacagcaagggggtctatgacatcgccttc
cacactgacggctccctcgccggcacgggaggcctggatgcctttggccgggtgtgggat
ctgcgcacgggacgctgtatcatgttcctggaagggcatctgaaggagatctacgggatc
aacttctccccaaatgggtaccacgtggccacgggcagcggggacaacacctgcaaggtg
tgggacctgcggcagaggaagtgcatctacaccatccctgcccaccagaacctggtcacc
ggcgtcaggttcgaacccaaccacgggaatttcctgctcacaggcgcctacgacaacacg
gccaagatctggacccaccctggctggtccccgctgaagacgctggcggggcacgagggg
aaggtgatgggcctggacatctccctggatgggcagctcattgccacctgctcctacgac
agaaccttcaagctctggacagccgagtag
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