Corvus cornix (hooded crow): 104688479 Help Entry 104688479         CDS       T03546                                  Symbol SETX Name (RefSeq) probable helicase senataxin   KO K10706   ATP-dependent RNA/DNA helicase, senataxin [EC:5.6.2.5 5.6.2.3] Organism ccw  Corvus cornix (hooded crow) Brite KEGG Orthology (KO) [BR:ccw00001]  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03021 Transcription machinery [BR:ccw03021]     104688479 (SETX) Enzymes [BR:ccw01000]  5. Isomerases   5.6  Isomerases altering macromolecular conformation    5.6.2  Enzymes altering nucleic acid conformation     5.6.2.3  DNA 5'-3' helicase      104688479 (SETX)     5.6.2.5  RNA 5'-3' helicase      104688479 (SETX) Transcription machinery [BR:ccw03021]  Eukaryotic type   RNA polymerase II system    Other transcription-related factors     Transcription termination factor      104688479 (SETX) BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  AAA_11 AAA_12 AAA_19 AAA_30 AAA_22 Viral_helicase1 UvrD-helicase SLFN-g3_helicase ResIII AAA_16 SAS4 DUF4164 nSTAND3 Motif Other DBs NCBI-GeneID:  104688479 NCBI-ProteinID:  XP_039417364 LinkDB All DBs Position 17:4249765..4274955 Genome browser AA seq 2690 aa AA seqDB search MSTCRWCTQSGAGTTEFLKHYAAQRLSQEDFEGSNDDLCYCLECVVEYHKSREECPRLHE DLWDLETSRLVAHMEKSMNEETGEDDELFLIDENGETRLSGYVGPNFENNLRVPLLEILK YPYLLLHKKVSELCVEVLCRMELSHDSFQVFEKYPGIYLFLVHPNEVIRRWAILTARNLG KVDRDDYYDLEEVLTCLFKVIELGLFENPDIYSSSMFEKGKLILLPAHLYDTANYKNYWL GICMLLSVLEEQAMDSLLLGPEKQNDFMQSILHTMEKEAADDSTDPFWPALHCFMVILDQ LGSKVWGQLIDPVQAFQTIINSVSYNNEIKNIRSSFRRTKSEPESDYGDDMISCSQIVYN YNTEKPQKDTGWKAAICPEYCPNMYEDMQTLANMLQSDIGRDMRVHHSTFLWFIPFVQSL MDLKDLGVAYIVEVIHYLCSEIKDILIERIQQCDKISEFFLLILVSIVELHRSKKCLHLL WISSQEWVEAVVRCATLPSRAFTRCSEKAPGLCAKGSGAGLFQAPNSVQHACVQLIRSLL KEGYQIGQHALCKQYLDKLNLLLRGNRAVGWQLSSQETQELQTCLKQVIRSINGKALSTS LAGGSSSNSTALPTISIKHERNACDDGYKMSGHEREDLYSPFVMSKEGRDCQENPFHRRR NAWEEECRDASRSSTACTSTEGLLMHIKKEPDNLTAQECIFPQNSLATKEGGKVQENRNY DLVAGKCNADDQCFNSNAQHSDFRRGRELEIKHEAEPRTPPHLSAQTHLDSLSSRNCKSM QETSVNSVFQSTLVPTKQISKEASLDSSNSRNEPGVQGKEDDSTLLLGRNDASPKKVSTE EKSASSLMSFFRKNSNMQTSNQEQPNLKDLDKYDCKNQISETCRDKISAYGYFPFSSENK RDMIRPLSVKRESSDRLFEFSEYFKRENSSVGNKEEDSVKTVSKDDAISDSQVDRELSKL SLAAYAKSVNFSVVSSQESSACHNVSDIRRKVKGTVRSSNEGQSTRCPCGADGPNNQVIV ISDSSDEEKSVSDKEETKTKNENVCAEQSSASSSISDSGTKRESKSPGSPMLLDDCDSQY FEFETEAEVFSAWQDTQAYAVETTQEYKQDHVKPAAERSNSDEFQNSNLDLWGYDLDYLS DDTMEEAASSIEKQTEDISHQKVVDDTKEATNSTLQESVSKEDAKGQLEKCVDKGTAKGF TLDSKLPEPRASTSPRSLASKLALKKNSTSPQKATAKCKSAPAVQRSPKKPPVVKTAKNK TPLQSMPERSQPGRSMPAVVPPRKVRQSPAPASTVEKLGLKKGPRKAFDLSQPSLESLAL LRSHGKAAGRIGVAQKKKTQQIEAQRLSVKHNKKLLICQDLRYSREARSKRSAKTSAGSL ESRNKVTKAGAKPVEQKPQSFELASLKESAENQREKKREETACPSASERKLESLSMEEVA SASKMPRSSDWNRKWEGNSVVVPPVPMDSSLSSTALGDDKNESSGKGCTVLPECEVKTSK QNGCKSDESSDEGDDNLFLTQLDPVDMELCSQEESVQDAAVSSKTPEEMDVDETLQQNEP SAVRKCSYKDCMEKVEEPGEYCSKHKATSPGADHVFAKPSLLPPKIRKPSTTKIFSSASS SRNAAFSKDLEDVRKLPPPSKSKVNAAKPVVVRPPLYPKPAPPGNPTCKSPSFSNVPQAL STNNVLQSQNRRYDNASNISRGPGRETYSSFLGAQQRDYSIFVNQVLKWTYEMFANFSHF GTPKNLLQSVVASVPVRFQGYNDYFNTFFPLMMLNAFETLAQEWVENQKVREKSYCFYLQ SFSADMNTAHFTAHLRESDLARQLHPKEDDLILLVVHKEKDTFGEESGMENHKVNHVGLV TRFSRPSGYANRQKEQQTACHLTVQTRGNLSFFIHKQVKCVVVGSLVTTHRKFKGLLLLS RSPLAKPIIDPSYNDFCPRDLPVASGSAASCMNEYNEDQKRAIETAYAMVKQHPGLPKIC LIHGPPGTGKSKTIVGLLSRVLRENTRNEKTAREKNSKIKPNRFLVCAPSNAALDELMKK IIIAFKEKCQNKQEPLGNCGDIKLVRLGAEKSINSEVRGFSLDKQVEHRMKRKPGDCDQD IQKKKEALDQKLDMLSRERAMHRCEKRESQMLNDEIGRLAKERQQLASQLKEVRVHSQKV QADIILESDIVCCTLSTSGGSLLESAFSRKGLDPFSCVIVDEAGQSCEVETLIPLIHRCN KLVLVGDPKQLPPTVKSLKAQQYGYDQSLMARLQRHLEEQVQRDVLRSLPVVQLTVQYRM HPDICLFPSNYVYGRTLKTAKAIEENRCSSDWPFQPYLIFDVADGREERDNDSYSNPREV KLVMELIRTIKEKRKDLGVRRIGIITPYSAQKKKIQEQLESVFKNNSPGEVDTVDAFQGR EKDCIIVSCVRANSSEGSTVACVLANSTKGSIGFLASLQRLNVTITRARFSLFILGRLQT LMEDKNWNNLIQDAQKRGAIIRTTEKNYKKEALRILKLRPPGQLPAVPGGTISSVAQAGS SSGKRSEPGNSGNSPRELAAGPGHAVPQGSRGPTQPPGTPSADSRRENAPAPSWASAADS RRGNVPASSGAAAADSRRGNVPASSGAAAADSRRGNVPASSGAAAADSRRGNVPASSGAA AADSRRGNVPASSGAAAADSRRGNVPASSGGCSCRIPGGEMSLHPQGLQL NT seq 8073 nt NT seq  +upstreamnt  +downstreamnt atgagcacatgccgatggtgcacacagagtggtgctggcaccaccgagttcctgaagcac tatgctgctcaaagactgtcccaggaagattttgaaggatccaatgatgacctctgttac tgcctggagtgtgtggttgaataccacaaatcgagggaagaatgtccaaggttgcatgag gacttgtgggacttggaaacctcccgccttgttgcccacatggagaaatccatgaatgaa gaaacaggagaagatgatgagttgtttctgatagatgagaatggggagacacgtctgtct ggatatgtgggcccaaattttgagaacaacctgcgagtgcccctgctggaaatactgaaa tatccctatctgctgctgcataagaaagtcagtgagctgtgtgtagaagtgctctgtaga atggaactaagccacgactcctttcaggtctttgagaaatacccaggaatctatctcttt ttggtacacccaaatgaggtgattcgtcgatgggccatcctaacagcaagaaatttaggg aaggttgatagggatgattactatgacttagaggaagtgctgacttgtttgttcaaagtt attgagttgggactttttgagaatccagatatttacagctcttcaatgtttgaaaagggt aaactcatccttctgccagctcatttgtatgatacagccaactacaagaactattggctg gggatctgcatgttgctgtcagtgctggaagaacaagccatggattctttgttactgggc cctgaaaaacaaaatgatttcatgcagtctatacttcacactatggagaaagaagcagct gacgattccactgaccccttctggcctgccctgcattgtttcatggttattttggatcag ctcggatctaaagtttggggtcagcttattgatcctgtccaagcctttcaaaccataata aacagtgtgagctacaacaatgaaatcaaaaatattcgcagtagctttaggaggacaaaa tctgaaccagagtcagactacggtgatgacatgatttcttgcagtcagattgtgtataat tataacacagaaaagcctcaaaaggacactggatggaaggctgccatttgcccagagtac tgccccaacatgtatgaagatatgcagaccctggctaacatgcttcagtctgacattggc agagatatgcgtgtccatcacagcacattcctctggttcatcccctttgttcagtccctt atggatctcaaggacttgggtgtagcctatatagtagaggtcatccactacctttgctca gaaatcaaagacatcctcatcgaacgaatccagcagtgcgacaaaatctctgagttcttc ctcctcatcttagtgtccattgttgagctacacagaagcaagaagtgcctgcacttgctg tggatcagctcccaggagtgggtggaggcagtggtgaggtgtgctacacttcccagcaga gccttcacgcggtgcagtgagaaggcgccggggctgtgtgccaagggctcgggcgcgggg ctgttccaggccccgaactcggtgcagcacgcctgcgtgcagctcatccgcagcctgctc aaggagggctaccagatcggccagcacgccctctgcaagcagtacctggacaaactcaac ctcctcctgcggggaaatcgagctgtggggtggcagctgagcagccaggaaacccaggag ttgcaaacgtgtttaaagcaagttataagaagtataaacggcaaagcactgagcacctct ttggctggaggaagcagttcaaactcaacagctttgccaaccatctcgataaaacacgag aggaatgcatgtgatgatggatacaagatgagtggacatgagagagaggacctttattca ccatttgtcatgtcaaaggaaggcagagattgtcaagagaaccctttccataggagaagg aatgcctgggaagaggaatgcagagatgcatctagaagttcaacagcttgcacatccaca gaaggcctcttgatgcatattaaaaaggaacctgataacctgacagctcaggagtgtatc ttcccacagaactcactggcaacaaaagaaggtgggaaagttcaggaaaataggaactat gatcttgtggcagggaaatgcaatgcggatgatcaatgctttaattcaaatgcccagcat tcagatttcaggagaggcagagagttagaaatcaaacacgaagcagaacccagaacgcca ccgcatctgtctgctcaaactcatcttgattccctatcttcaaggaattgcaaaagtatg caggagacaagtgtaaacagtgtgttccagtccacactggtccctactaaacagatatcc aaggaagcatcgctagattcctctaactctagaaatgaacctggggtgcaggggaaggaa gatgacagtactttgcttttagggcgtaatgacgcctcaccaaaaaaagtatcaacagaa gaaaaatcagcttcatcgttgatgtctttctttaggaaaaactctaacatgcaaacttca aaccaggagcagcctaatttaaaagacttggataaatatgactgcaaaaatcaaatttct gagacctgtagggataaaatttcagcatatggttattttccatttagctctgaaaacaag agggatatgatcaggccactgtcagtgaagcgtgaatcaagtgacaggttgtttgagttt tcggaatatttcaagagggagaacagttcagtggggaataaagaggaggattctgtgaag acggtttctaaagatgatgctatatcagactcccaggttgatagagagctcagtaaatta tctttagctgcttatgccaaaagcgtcaatttttctgttgtgtccagccaggaaagctca gcgtgccacaatgtgtctgatattagaaggaaagtgaaaggtactgtaagatcttccaat gaaggccaaagtaccaggtgtccctgtggtgcagatggccctaacaatcaagtcattgta atttcagactcttctgatgaagaaaaaagcgtgtctgacaaggaggaaacaaaaaccaag aatgaaaatgtgtgtgcagagcagtcttcagcttccagcagcatttcagatagtggcact aaaagagaatcaaagtctccaggctctcccatgttactggatgattgtgattctcagtac tttgaatttgaaacagaagctgaggttttttcagcttggcaagatactcaagcgtatgct gtggaaacaactcaggagtataaacaagatcacgttaaaccagcagctgagaggagtaat tcagatgagttccagaacagtaacttagatttatggggttatgatctggattacttaagt gatgacaccatggaagaagcagcaagctcgatagaaaagcagacagaggatatttctcat cagaaagtagttgatgatacaaaagaagcaactaattcaaccttgcaagaatcagttagt aaggaagatgcaaaaggtcagctggagaaatgtgtagacaaaggtactgctaaaggcttc actctggactcaaaattgcctgaacccagagcatctacatctccccgctccttagcttca aagttggcccttaagaaaaacagcacaagcccacagaaggccacagcaaaatgtaaatca gcaccggctgttcagagaagtcctaaaaaacctccagttgttaaaacagccaaaaataaa acaccacttcaaagcatgccagagcgttctcagcctggcaggtcaatgcctgctgtggtt cctccaagaaaagttcggcagagtcctgctccagcatcaactgtggaaaagctgggcctg aagaagggcccccgcaaggcgtttgacttgtcccagccctccctggagagcctggctctg ctgcgcagccacggcaaagctgcaggcagaattggagttgcacagaaaaagaagacccaa cagatcgaggctcagcgtttgtctgtgaaacataataaaaaactgctcatctgccaagac cttcgctattcaagggaggcgaggtccaaaagaagtgcgaaaacttctgcaggaagtttg gagagcagaaacaaagttaccaaagcgggtgcaaaacctgtggaacaaaagcctcaaagt tttgaattggcatctcttaaagaatctgctgaaaaccaaagggagaaaaaaagagaagag actgcttgtccctctgccagcgagagaaaattggagagcctctctatggaggaggtggca agtgcctctaaaatgcctcgttcttcagactggaacagaaaatgggagggtaacagtgtg gtggttcctcctgtccctatggattcaagtctctcttccactgcacttggagatgataaa aatgagtcttcaggaaaaggttgcactgtcctgcctgagtgtgaggtgaaaacttcaaag caaaatgggtgtaaatcagatgaaagcagtgacgaaggtgatgataatctgtttttaact cagttagatcctgtggatatggagttatgctctcaggaggaaagtgttcaagatgctgct gtaagtagcaagaccccagaggaaatggatgttgatgaaactcttcagcagaacgaaccc tcagctgttaggaaatgtagctataaagactgtatggaaaaggtggaagaacctggagaa tactgtagtaaacacaaagccaccagcccaggggcagatcacgtgtttgccaagccttct ctcctgccacctaaaataagaaagccttccactaccaaaattttcagctcagcaagttct tcacggaacgcagccttcagcaaagatcttgaggatgtccgaaagttacccccaccttca aaaagcaaagtgaatgcggccaaaccggtggtagtcaggccaccactgtatccaaaacct gcaccaccaggaaatccaacatgcaaatctccaagtttcagtaatgtacctcaagccctc agtaccaataatgttctccagtcacaaaatagacgctatgacaatgcttcaaatatttcc agagggcctggccgagaaacctactcctcctttcttggtgctcagcagcgcgattacagc atttttgttaaccaagtcctaaagtggacttacgaaatgtttgcaaacttcagccacttt ggaactcccaagaatcttctgcagtccgtagtagcctctgttcctgtccgatttcagggc tacaatgactattttaatacatttttccccttgatgatgctcaatgcctttgaaacactg gcacaagaatgggtagaaaaccagaaagtaagagagaaaagttactgcttctacttacag agcttttctgctgacatgaatacagcacattttacagctcatttacgagagagtgatttg gcaaggcagcttcatccaaaggaggatgacttaatcctcttggtggtccacaaggagaag gacacctttggggaagaaagtgggatggagaaccacaaagtgaatcatgttggccttgtg acacgattttctcgtccatctggctatgcaaatagacaaaaggagcagcaaactgcctgt catcttactgtgcaaacccgaggcaatctgtcgttcttcatccataagcaagtgaagtgt gtggtggttggctccctggtgaccacacacagaaagttcaaaggtcttctgctgctgagc aggagccccctggctaaacccatcatagatccaagttacaacgatttctgtcccagagat ctgcctgtagcctcaggaagtgctgcttcatgtatgaatgaatacaatgaagatcaaaag agagccattgagacagcttatgccatggtaaagcaacacccaggacttcccaaaatctgc cttatccatggaccacctgggacagggaaatcaaaaactattgtaggacttctgtcccgt gttttgagagaaaacactaggaatgagaaaacagctcgggaaaaaaattccaagattaag ccaaaccgttttctagtctgtgcaccatcaaatgctgctcttgatgaactcatgaaaaag atcatcattgcatttaaggaaaaatgccaaaacaaacaggagcctttgggaaattgtggt gatatcaaattagtgcgacttggtgctgaaaaatcaatcaacagtgaagtccgggggttc agcctggataagcaagttgaacacagaatgaaacgaaagccaggtgactgtgaccaggat atccagaagaagaaagaagctctggatcagaagctggatatgctttctcgagagcgtgcc atgcacagatgtgagaagagagagagtcaaatgttaaatgatgaaattggcagacttgca aaggagagacaacaacttgcttctcagctaaaggaggttcgggtgcactcccagaaagtg caggcagacatcatcctggagtctgacatcgtctgctgcacgctgagcaccagcgggggg agcctgctggaatcggccttctcacggaaggggctcgatcccttcagctgtgtcatcgtg gatgaggcagggcagtcctgtgaggtggaaacactgattccactgatccatcgctgcaat aaacttgtccttgttggagatcccaaacagctccctcctactgtcaaatcactaaaagct cagcagtatggctacgaccagtccttgatggcccgtttgcagaggcacctggaggagcaa gtgcagagggacgtgctccgcagcctgcccgtggtgcagctgaccgtgcagtacaggatg cacccggacatctgcctcttcccatccaactatgtttatggcaggaccctaaagactgcc aaggcaatagaggagaacagatgttcttcagattggccattccagccatacctgattttt gatgtagctgatggtcgtgaggagcgagacaatgactcttacagcaatcctcgggaagtg aagctggtgatggagctaattagaacaattaaagaaaaaaggaaggatctgggcgttcgt cgcattggaataattaccccttacagtgcccagaaaaagaaaattcaggaacaactagaa agtgtgtttaagaataacagcccgggagaagtggacacagtggatgcgttccagggccgg gagaaggattgcatcatcgtgtcctgtgtgcgggcaaacagctctgaaggctccactgtg gcatgtgtgctggccaacagcaccaaaggatccattgggtttctggcaagcctccagcgg ctgaatgtcaccattacccgagcccggttcagcctcttcatcctgggccggctgcagacg ctcatggaagataaaaactggaataacttgattcaggatgctcagaaaagaggcgccatt atcaggacaacagaaaaaaattacaagaaagaggctctgaggattttgaagctcaggcca ccaggacagctcccagctgtcccaggagggacaatatcttctgtggcacaggctggttct tccagtggcaagaggagtgagcctggaaattctgggaacagcccacgggaacttgctgct ggccctggccatgcagtaccccaaggaagccgagggcccacacagcctccagggactccg tctgcagattccaggagggaaaatgcccctgcaccctcctgggcttcagctgcagattcc aggaggggaaatgtccctgcatcctcaggggctgcagctgcagattccaggaggggaaat gtccctgcatcctcaggggctgcagctgcagattccaggaggggaaatgtccctgcatcc tcaggggctgcagctgcagattccaggaggggaaatgtccctgcatcctcaggggctgca gctgcagattccaggaggggaaatgtccctgcatcctcaggggctgcagctgcagattcc aggaggggaaatgtccctgcatcctcagggggctgcagctgcagaattccaggaggggaa atgtccctgcaccctcaggggctgcagctgtag

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