Corvus cornix (hooded crow): 104688496
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Entry
104688496 CDS
T03546
Symbol
PNN
Name
(RefSeq) pinin
KO
K13114
pinin
Organism
ccw
Corvus cornix (hooded crow)
Pathway
ccw03013
Nucleocytoplasmic transport
ccw03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ccw00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
104688496 (PNN)
03015 mRNA surveillance pathway
104688496 (PNN)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ccw03019
]
104688496 (PNN)
03041 Spliceosome [BR:
ccw03041
]
104688496 (PNN)
Messenger RNA biogenesis [BR:
ccw03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
104688496 (PNN)
Spliceosome [BR:
ccw03041
]
Complex C
Other components
EJC/TREX
104688496 (PNN)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Pinin_SDK_N
Pinin_SDK_memA
Motif
Other DBs
NCBI-GeneID:
104688496
NCBI-ProteinID:
XP_039408846
LinkDB
All DBs
Position
5:complement(23813314..23823403)
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AA seq
694 aa
AA seq
DB search
MAVAVRALQEQLEKAKESLKHVDENIRKLTGRDPNDVRPPQNRLLALTGPGGGRGRGSLL
LRRGFSDSGGGPPAKQRDLEGASSRLGGERRTRRESRQESDAEDDDIKKPALPSSVVATS
KERTRRDLIQDQNMDEKGKQRNRRIFGLLMGTLQKFKQESTVAIATERQKRRQEIEQKLE
VQAEEERKQVENERRELFEERRAKQTELRLLEQKVELAQLQEEWNEHNAKIIKYIRTKTK
PHLFYIPGRMCPATQKLMEESQKKMNALFESRRNEFAEQINKMEARPRRQSVKEKEHQEV
QNEEKKEEQNKEQEEGKVDQQVEEMETGNQHNDVEMEEVGEEKGKIGSGSGHSDAEKEQE
EDEQKHDVEMKVEEPTEVRENDKQQDGQHEEVTVVKEESENVQPVDNEQDVAEMNEAGSV
ERIENENGREIEPETECDVQPEKVCNVPSPKKEKGIKIENKAELEETQEKTPEAQTESVA
EALSQPLSVPLAQSPQLSQSTQDTEPQADKDENAALSVKVVETQAEQNQTPSAESKSKTR
SRSRGRAGNKTGHNRSSSSSSSSTSSSTTSASSSSTGSSTSRSSSTSSSTTSGSTSRDSS
SSSSSSSESRSRSRGRGHNRDRKRRRSTDRKRRDASGVDRSHKSSKGGSRDTKSSKDKSL
RSDRKRSISESSRSGKRTSRSERDRKSDRKDKRR
NT seq
2085 nt
NT seq
+upstream
nt +downstream
nt
atggcggtggcggtgcgcgcgctgcaggagcagctggagaaagccaaggaaagcctcaag
cacgtggacgagaatatccgcaagctcacgggccgggaccccaatgatgtgaggccccct
caaaacaggctgttagccctcacaggccccggtggaggtagagggcgcgggagtttattg
ctaaggcgtggattctcagatagtggaggaggacccccagccaaacagagggatcttgaa
ggtgcatccagtaggctgggtggagaacgtcggacaagaagagaatcacgccaagaaagc
gacgcagaggatgatgatattaaaaagccggcgttgccatcttctgttgttgctacctcc
aaagagcgaacacgtcgagaccttatacaagaccaaaatatggatgagaaaggaaaacaa
aggaatcgacgtatatttggcttgttgatgggcactcttcagaaatttaaacaggagtcc
acagttgctattgctactgagaggcaaaagagacgacaagaaattgaacaaaaacttgaa
gtgcaggcagaggaggagagaaagcaagttgaaaacgagaggcgagaactgtttgaagaa
agacgtgctaaacagacagagctgcggttattggagcaaaaggttgagcttgctcagttg
caagaagaatggaatgaacataatgctaaaataattaaatacataagaacaaagacaaaa
cctcatttattctacatacctggcagaatgtgtcctgctacgcagaagctgatggaagag
tcacagaaaaagatgaatgcgctctttgaaagcaggagaaatgaatttgcagagcagatt
aacaaaatggaggccaggcccagaagacaatctgtgaaggaaaaagaacatcaggaggtg
cagaatgaagaaaagaaggaagaacagaacaaggagcaggaagagggtaaggtggatcag
caggtggaagagatggagacaggtaatcagcacaatgatgtagaaatggaggaggtaggg
gaggaaaagggaaaaataggttcaggttcagggcatagtgatgcagaaaaagaacaggaa
gaggatgaacagaaacatgatgtggagatgaaagtagaagagcctactgaggtgagggag
aacgacaagcaacaggatggtcagcatgaggaggtcacagttgtaaaagaagaaagtgaa
aatgttcagcccgtggataatgagcaggatgtggctgaaatgaatgaggcaggtagtgta
gaacgtatagaaaatgaaaatggcagagaaatagaaccagaaacagagtgtgatgttcag
ccagaaaaagtgtgtaatgttccttctcccaagaaggagaaaggtatcaaaatagaaaat
aaagctgaacttgaagaaacacaggagaaaacacctgaagctcagacagaatctgtggct
gaggctctatctcagccactatctgtgccactagcccagtcacctcagttgtctcagtcc
actcaggatacagagccccaggcagacaaggatgaaaatgcagcgctatctgtaaaggtg
gttgaaacccaggcagagcagaatcagacaccaagtgcagaaagcaagagtaagactagg
agtagaagcaggggtagggcaggaaacaaaactggtcataaccgtagcagcagcagtagt
agcagtagtacttcaagcagtactaccagtgcaagtagttccagtactggcagcagtacc
agtcggagcagttccaccagcagcagcactacaagtggaagtaccagcagggacagtagc
agcagtagctctagcagtagtgaaagtagaagtcgaagccgaggaagaggacataacaga
gatagaaaacgcagaaggagcacagacaggaagcgaagggatgcttcaggagtagacaga
agtcacaagtcctcaaaaggtggtagcagagataccaaaagctcaaaggataaaagtttg
aggtctgacagaaagagatctatatcagaaagtagtcggtcaggcaagagaacttcacgg
agtgaaagagaccgtaaatcagacaggaaagacaaaaggcgttaa
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integrated database retrieval system
