Corvus cornix (hooded crow): 104688898
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Entry
104688898 CDS
T03546
Symbol
VPS41
Name
(RefSeq) vacuolar protein sorting-associated protein 41 homolog isoform X3
KO
K20184
vacuolar protein sorting-associated protein 41
Organism
ccw
Corvus cornix (hooded crow)
Pathway
ccw04140
Autophagy - animal
ccw04148
Efferocytosis
ccw05132
Salmonella infection
Brite
KEGG Orthology (KO) [BR:
ccw00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
104688898 (VPS41)
04148 Efferocytosis
104688898 (VPS41)
09160 Human Diseases
09171 Infectious disease: bacterial
05132 Salmonella infection
104688898 (VPS41)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
ccw04131
]
104688898 (VPS41)
Membrane trafficking [BR:
ccw04131
]
Endosome - Lysosome transport
Tethering complex
Hops complex
104688898 (VPS41)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_Vps41
Beta-prop_Vps41
zf-RING_Vps41
Clathrin
WD40_CDC20-Fz
WD40_Prp19
zf_RING_Vps8_fungal
Beta-prop_EML_2
Beta-prop_HPS5
Vps39_1
TPR_PEP5_VPS11
zf_RING_Vps8
ANAPC4_WD40
WD40_WDHD1_1st
Frtz
Beta-prop_RIG_2nd
zf-RING_5
Beta-prop_IFT140_2nd
TPR_GEMI5
zf-RING_11
zf-rbx1
Motif
Other DBs
NCBI-GeneID:
104688898
NCBI-ProteinID:
XP_010396921
LinkDB
All DBs
Position
2:complement(24790800..24904359)
Genome browser
AA seq
857 aa
AA seq
DB search
MAEAEEKVESETRSNEESTDESEEDESEEEPKLKYERLSNGMTEILQKDAASCMTVHEKF
LALGTHYGKVYLLDVQGNITQKFDVSPVKINQISLDESGEHMGVCSEDGKVQVFGLYSAE
EFHETFDCPIKIVAVHPHFVRSHFKQFVTGGKKLLLYERGWMNRWKPSVLHEGEGNIRNV
KWRGHLIAWANNMGVKILDMISKQRITNVPRDDISLRPDMYPCSLCWKDNLTLIIGWGNS
VKICSVKERHASEMRDLPNRYVEIVFQFDTEFYISGLAPICDQLVILSYVKEISEKTEVE
CCARPRLDIVQPLPESCEEISSDALTVRGFQENECRDYHLEYSEGESLFYIISPRDVVVA
KERDQDDHIDWLLEKKKYEEALMAAEISQKTIKKHKILDIGLAYINHLVEKGEYDLAARK
CQKILGKNTELWEFEVYKFKEIGQLKAISRYLPRRDPVLKPLIYEMVLHEFLESDYEGFA
TLIKEWPGDLYNNTIIVQAVVDHLKKDPQNRTLLQTLAELYTYDQRYGRALEIYLTLRHK
DVFQLIHKHNLFSSIRDKIVLLMDFDSEKAVDMLLDNEDKISIDRVVEELENRPELQHVY
LHKLFKRDHHKGQRYHEKQISLYAEYDRPNLLPFLRDSTHCPLEKALEICQQRNFVEETV
YLLSRMGNSRSALKMIMEELQDVDKAIEFAKEQDDGELWEDLILYSIDKPPFITGLLNNI
GTHVDPILLIHRIKEGMEIPNLRDSLVKILQDYNLQILLREGCKKILVADSLSLLKKMHR
TQMKGVLVDEENFCESCLSPILPSDASKSFNVVVFHCRHMFHKECLPVPNTVSSVQFCNI
CSAKHRGPGSAILEMKK
NT seq
2574 nt
NT seq
+upstream
nt +downstream
nt
atggcggaagccgaggagaaggtagagagtgaaaccaggtctaatgaggaatcaacagat
gaatctgaggaagatgagagtgaagaagagcctaagctcaagtatgaacggctttctaat
ggaatgacagaaattctccagaaggatgcagccagctgcatgacagtgcatgaaaagttt
ttggcactgggaacacattatggcaaagtttatttacttgatgtccaggggaacatcaca
cagaagtttgatgttagcccagtaaagataaatcagatcagcctggatgaaagtggagag
cacatgggtgtttgctcagaagatggcaaggtgcaagtgtttggattatattcagcagaa
gagtttcatgaaacatttgactgtcctattaaaattgttgctgttcatcctcattttgta
agatcccacttcaagcaatttgtaacaggaggaaaaaagttgctgttatatgaaagaggg
tggatgaatagatggaagccttcagttttacatgaaggagaaggaaatataagaaatgta
aaatggagaggacacttaattgcttgggctaataatatgggcgtgaagatacttgacatg
atctccaagcaaagaattaccaatgtgcctcgagatgacataagccttcgcccagatatg
tatccctgcagcctttgctggaaggataatttaacgctgattattggctggggaaattca
gtaaagatttgctcagtaaaagaacggcatgccagtgaaatgcgtgaccttccaaaccgc
tatgtggaaatagttttccaatttgacactgaattctacatcagtggacttgcacctatc
tgtgaccagcttgttatactttcatacgtaaaggagatctccgaaaaaacggaagtggag
tgttgtgcaaggcctagactcgatattgtacaacccctacctgagtcctgtgaagaaatc
tcttctgatgcactaacagtacgaggatttcaggaaaacgaatgtcgtgattatcatcta
gagtattcggaaggtgaatcacttttttatatcatcagcccaagagatgtggttgtggct
aaagagcgggaccaagatgaccacattgactggcttcttgaaaagaagaaatacgaagaa
gctttgatggcagctgagatcagtcagaaaacgataaaaaagcacaagattttggacatt
ggcttagcctatataaatcacctagtggagaaaggagagtatgacctggctgctcgaaag
tgccagaaaatccttggcaaaaacacagaactctgggaatttgaagtttacaagttcaaa
gaaataggtcagcttaaagcaattagtcgttacttgccaagacgagatccagttttgaaa
cctctgatctacgaaatggtcctgcatgaatttttggaaagtgactatgaggggtttgca
accctaataaaagagtggcctggagatctgtacaacaacacaatcatagttcaagctgta
gtggatcacctgaagaaagatccacagaacaggactttgctacaaacacttgcagaattg
tatacttacgatcagcgctatggcagagccctagaaatctacctaactctgaggcacaaa
gatgtcttccagttgatccataagcacaatctcttcagttctatcagagacaaaattgtt
ctgctcatggattttgattcagagaaagcggtagacatgcttttggataatgaagataaa
atttctattgacagagttgtcgaagaattagaaaacaggcctgagttacagcacgtgtat
ttgcacaagcttttcaaaagagaccaccataaaggccaacgatatcatgagaaacagatc
agcctttatgctgaatatgatcgaccaaacttactaccatttctcagagacagcacacac
tgcccactggagaaggctcttgagatctgccagcagaggaactttgtagaagagacagtc
taccttctgagcagaatgggtaatagccgcagtgccttgaagatgataatggaagaattg
caagatgtagataaagctattgaatttgccaaggaacaagatgatggagaactttgggaa
gatcttattttatattctattgacaaaccaccttttattactggtttgttgaacaatatt
ggaacccatgttgatcctattcttttgatccaccgcattaaggaaggcatggagattcct
aatttgagagactcactagtgaaaattcttcaggactacaacttgcagatcttgctgcgg
gaaggttgcaaaaagatactcgttgctgattctctttctttattgaagaaaatgcatcga
actcagatgaagggtgtcctagtggatgaggagaatttctgtgaatcatgtctgtctcca
atacttccttcagatgcatccaagtccttcaatgtggtagtgttccactgcagacacatg
tttcacaaagagtgcctacctgtacctaacacagtatcttctgtccagttctgcaatata
tgtagtgccaaacaccgggggccaggaagtgcaatcctggagatgaagaaatag
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