Corvus cornix (hooded crow): 104689035
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Entry
104689035 CDS
T03546
Symbol
TRIM71
Name
(RefSeq) LOW QUALITY PROTEIN: E3 ubiquitin-protein ligase TRIM71
KO
K12035
tripartite motif-containing protein 71 [EC:
2.3.2.27
]
Organism
ccw
Corvus cornix (hooded crow)
Brite
KEGG Orthology (KO) [BR:
ccw00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ccw03019
]
104689035 (TRIM71)
04121 Ubiquitin system [BR:
ccw04121
]
104689035 (TRIM71)
Enzymes [BR:
ccw01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
104689035 (TRIM71)
Messenger RNA biogenesis [BR:
ccw03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
104689035 (TRIM71)
Ubiquitin system [BR:
ccw04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRIM/RBCC proteins
104689035 (TRIM71)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NHL
Filamin
DUF5128
zf-B_box
SGL
ANCHR-like_BBOX
zf-C3HC4
zf-RING_UBOX
zf-RING_5
DUF4094
Motif
Other DBs
NCBI-GeneID:
104689035
NCBI-ProteinID:
XP_039406104
LinkDB
All DBs
Position
2:37496508..37553142
Genome browser
AA seq
880 aa
AA seq
DB search
MASFPESDFQICPLCKEMCGSPAPLSSNSSTSSSSSQTSSSSGGGGGSSCGGPAAAAPRL
PCLHAFCRQCLEAQRHPGAGDALKLRCPICDQKVVISEPSGMDALPSSNFLLSNLLDVVV
VAAAADEQKNGRAAGAGPAAGSSAGGGGGGGGNNRHHGRPPPGPPAPPAPRPPPQPRPPS
STSSSSSSGGGGGSAALLLRRPHSRQGEPRCSSCDEGNAASSRCLDCQEHLCDNCVRAHQ
RVRLTKDHFIERFAAGSAAAGPAAPLALSPPYPASPYNILSVFPDRASYCQHHDDEVLHF
YCDTCSVPICRECTMGRHVGHSFIYLQDALQDSRTLTIQLLADAQQGRQAIQLSIEQAQA
VAEQVEMKAKVVQSEVKVVTTRHKKALEERECELLWKVEKIRQVKAKSLYLQVEKLRQNL
NKLDNTISAVQQVLEEGRTMDILLARDRMLAQVQELKNVRGLLQPQEDDRIMFTPPDQAL
YMAIKSMGFVSSGAFAPLTKATGEGLKRALQGKVASFTVIGYDHDGEPRLSGGDMISAVV
MGPDGNLFGADVSDQQNGTYLVSYRPQLEGEHLVSVMMCNQHIENSPFKVVVKSGRSYIG
IGLPGLSFGSEGDSDGKLCRPWGVSVDKEGYIIVADRSNNRIQVFKPCGTFHHKFGTLGS
RPGQFDRPAGVACDISRRIVVADKDNHRIQIFTFEGQFILKFGEKGTKNGQFNYPWDVAV
NAEGKILVSDTRNHRVQLFGPDGVFLNKYGFEGALWKHFDSPRGVTFNHEGHLVVTDFNN
HRLLVIHPDCQSARFLGSEGTGNGQFLRPQGVAVDQEGRIIVADSRNHRVQIFESNGSFL
CKFGTQGSGFGQMDRPSGIAVTPDGMIVVVDFGNNRILVF
NT seq
2643 nt
NT seq
+upstream
nt +downstream
nt
atggcttcgtttcccgagtccgacttccagatctgcccgctgtgcaaggagatgtgcggc
tcgccggctcccctctcgtccaattcctccacctcctcgtcctcctcgcagacctccagc
tcctccgggggtggcggcggctcctcctgcgggggccccgccgcggcggctccacgtctg
ccctgcctgcacgccttctgccgccagtgcctggaggcgcagcggcaccccggcgcgggg
gacgcgctcaagctgcgctgccccatctgcgaccagaaggtggtgatctcggagccctcg
ggcatggacgcgctgccctcctccaacttcctcctcagcaacctgctggacgtcgtcgtc
gtggccgccgccgccgacgagcagaagaacggccgcgccgccggggccggccccgccgcg
ggctcgagcgctggcgggggcggcggcggcggcggcaacaaccggcaccacggccgcccg
ccgccggggccgcccgcgccgccggctcctcgcccgccgccgcagcctcggccgccctcc
tcgacgtcgtcgtcgtcctcctcgggcggcggcggcggctcggcggcgctcctgctgcgg
cggccccacagccggcagggcgagccccgctgcagctcctgcgacgagggcaacgccgcc
agctcccgctgcctcgactgccaggagcacctgtgcgacaactgcgtgcgggcgcaccag
cgcgtccgcctcaccaaggaccacttcatcgagcgcttcgccgccggctccgccgccgcc
ggtcccgccgcgccgctcgccctcagcccgccctaccccgcctcgccgtacaacatcctc
tccgtcttccccgaccgggccagctactgccagcaccacgacgacgaggtactgcatttc
tactgtgatacctgttctgtccccatatgtcgggaatgtaccatgggacgacatgtgggt
cacagctttatctacctccaagacgccctacaggattccaggactctcaccattcagctc
ctggcagatgctcagcaaggacgacaggctattcaactgagtattgaacaggcccaggct
gtggcagagcaagttgagatgaaagcgaaggtggtgcagtctgaagtcaaagtagtgacc
actagacataagaaggccttggaagagcgggagtgtgagctgctctggaaggtggaaaag
attcgccaagtcaaggccaagtcactctacttgcaagttgaaaagttacgtcagaaccta
aacaagctggataacaccattagtgctgtacagcaggtcctggaggagggtcgtaccatg
gatattcttctggctcgggaccgcatgctggctcaggtgcaggagctgaagaacgtcaga
ggccttctccagccacaggaagatgacaggatcatgttcacccctcctgaccaggcattg
tatatggccattaaatctatgggctttgtcagcagtggggcttttgctcccttgaccaaa
gccacgggggaaggtctcaagcgtgcgctgcagggcaaggtggcctctttcaccgtgatc
ggctacgaccacgacggggagcctcgcctttcagggggtgacatgatctctgcagtggtc
atgggcccagatggaaaccttttcggggcagacgtcagcgatcagcagaacggaacctac
ctggtcagctaccgtccccagctggagggagagcacctggtgtccgtgatgatgtgcaac
caacacattgagaacagccccttcaaagtggtggtgaagtctgggcgcagctacatcggc
atcgggctgccggggctgtccttcggcagtgagggagacagcgacggcaagctctgccgc
ccctggggggtcagtgtcgacaaagagggctacatcattgtcgccgaccgcagtaacaac
cgcatccaggtgttcaagccatgcgggaccttccatcacaagtttggcacgctgggctcc
cggccgggccagttcgatcgccctgccggtgtggcctgtgacatttcgcgtaggattgtc
gtggccgacaaggacaatcatcgcatccagatcttcacgtttgaggggcagttcattctg
aagtttggggagaaaggaacaaagaacgggcaattcaattatccatgggatgtggctgtc
aacgcagagggcaagatcctggtctctgacacgaggaaccatcgtgttcagttgtttggg
cccgacggtgtgttccttaacaagtatggcttcgaaggggcactctggaagcactttgat
tcccccagaggtgtgacattcaatcatgagggccacttggtagtgacggacttcaacaac
catcgcctcctggtcatacatccagattgccagtcagcacgcttcctgggctccgagggc
accgggaacggccagttcctgcgcccgcagggagtggccgtggatcaggaagggcgcatc
attgtggccgactccaggaaccaccgggtgcagatatttgagtccaatggtagcttttta
tgcaaatttggcactcagggaagcggctttggtcagatggaccgtccttcaggtatagct
gtcacccctgatggcatgattgttgtggtcgactttggaaacaatcgaattctcgtcttc
taa
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