Corvus cornix (hooded crow): 104689776
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Entry
104689776 CDS
T03546
Name
(RefSeq) general transcription factor IIH subunit 2
KO
K03142
transcription initiation factor TFIIH subunit 2
Organism
ccw
Corvus cornix (hooded crow)
Pathway
ccw03022
Basal transcription factors
ccw03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ccw00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
104689776
09124 Replication and repair
03420 Nucleotide excision repair
104689776
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ccw03021
]
104689776
03400 DNA repair and recombination proteins [BR:
ccw03400
]
104689776
Transcription machinery [BR:
ccw03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
104689776
DNA repair and recombination proteins [BR:
ccw03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
104689776
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ssl1
VWA_2
C1_4
VWA
IBR
HscB_4_cys
Motif
Other DBs
NCBI-GeneID:
104689776
NCBI-ProteinID:
XP_010398386
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Position
Z:complement(28584725..28596716)
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AA seq
395 aa
AA seq
DB search
MDDEPERTKRWEGGYERTWEILKEDESGSLKATIEDILFKAKRKRLFEHHGQVRLGMMRH
LYVVVDGSRTMEDQDLKPNRLTCTLKLLEYFVEEYFDQNPISQIGLIVTKSKRAEKMTEL
SGNSKKHVTALKKAVDMNCSGEPSLYNSLNLAMQTLKHMPGHTSREVLVVLSSLTTCDPA
NIYDLIKCLKAVKIRVSVIGLSAEVRVCTVLARETGGTYHVILDESHYKELLMHHVSPPP
ASSSSECSLIRMGFPQHTIASLSDQDAKPSFSMAQLENNSDPGLTLGGYFCPQCRAKYCE
LPVECKICGLTLVSAPHLARSYHHLFPLDAFQEVPLEEYKGERYCQGCQGEIKDQNVYIC
KVCQNAFCVECDLFVHDSLHCCPGCIHEHPAPVSV
NT seq
1188 nt
NT seq
+upstream
nt +downstream
nt
atggatgacgaacccgagcggaccaagcgctgggaaggaggctacgaaagaacatgggaa
attcttaaagaagatgaatccgggtcgttgaaagcaaccatcgaggacattctcttcaag
gcaaagaggaaaagactctttgaacaccatggacaagttcgtcttggaatgatgcgtcac
ctttatgtggttgttgatggatcaagaacaatggaggaccaagacttaaaaccgaacaga
cttacttgcactctgaagttactggaatattttgttgaagagtactttgaccagaatcct
attagtcagattggcttaattgtaaccaagagtaagagagcggaaaaaatgacagaactc
tcaggaaactcaaaaaagcatgtaactgctctgaagaaagcagtggatatgaactgcagt
ggagagccttctctatataattccctaaatctggctatgcagactttaaagcacatgcca
ggacatacaagcagagaggttttggtagtcctcagcagtctgacaacatgtgatccagcc
aacatctatgatctaattaagtgtttgaaagcagtaaagatcagagtatctgtcatcggc
ctaagtgctgaagttcgagtttgtacagtacttgcccgagaaactggtggaacataccac
gttattttagacgaaagtcattataaggaactgctgatgcaccatgttagtcctccaccc
gccagttcaagttctgagtgctcccttattcgaatgggttttcctcagcatactattgct
tctctatctgatcaagatgcaaagccctcctttagcatggcgcaattggaaaataacagt
gacccaggtctcacactgggtgggtatttttgtcctcagtgcagagccaaatactgtgag
cttcctgtggaatgcaaaatctgtggtcttacgttagtgtctgcacctcacctggctcgg
tcttaccatcacttgtttcctttagatgcctttcaggaagttccactggaagaatacaag
ggggaacggtattgtcaaggctgccagggagaaataaaagatcaaaatgtgtacatatgc
aaagtgtgtcagaatgcattttgtgtggagtgtgatctgtttgttcatgattcgctgcac
tgctgtcctggctgtattcacgagcaccctgctcctgtatctgtatga
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