Corvus cornix (hooded crow): 104689996
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Entry
104689996 CDS
T03546
Symbol
FREM2
Name
(RefSeq) FRAS1-related extracellular matrix protein 2
KO
K23380
FRAS1-related extracelluar matrix protein 1/2
Organism
ccw
Corvus cornix (hooded crow)
Pathway
ccw04512
ECM-receptor interaction
ccw04518
Integrin signaling
Brite
KEGG Orthology (KO) [BR:
ccw00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
104689996 (FREM2)
04518 Integrin signaling
104689996 (FREM2)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04091 Lectins [BR:
ccw04091
]
104689996 (FREM2)
Lectins [BR:
ccw04091
]
C-Type lectins
Lecticans
104689996 (FREM2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin_3
Frem_N
Calx-beta
Big_9
HYR
Motif
Other DBs
NCBI-GeneID:
104689996
NCBI-ProteinID:
XP_019141855
LinkDB
All DBs
Position
1:52107839..52227582
Genome browser
AA seq
3164 aa
AA seq
DB search
MQPLHARPRRLLVGLLLLLVGCAWVGAAEPPPGSSAAVSSPWSPEAAPVVVANRGLRVPL
GRSAWLDPARDLVLQVQPGDRCHLTVLDEDPLWQRPGRLSPRRFPCDFGAREVQYSHLGG
RSPARDRVRLQLRYDSPSRALVLPLVLEVEVLFTQLEIVTRNLPLTVERLRGTSNPLDAR
SLEFAFEPGRQRCRVGLLPLLAGLPRYGEILNYPPAAAGGGGEAAGGGPMPSSMWDCEEF
LRLGLRYRHTAAGGSPNRDLVPLVAELREAAGGGALLKREYFQVLVRIRAGTENVAPKPS
FLAMLMMEVDQFVLTALTPDMLSAEDAESPPDLLLFNITSPFGPGQGHMVSTDDRSLPVT
SFSQRDVRELRIAYQPPMEDSDRERLFELELEVLDPEGAASEPFAFVIVVKPMNTLAPVV
TRNTGLVLYEGQSRPLSGPGPSPNLVVSDEDDLEQVRVSVVAGLKHGHLTLLEDTPGSGA
PRKHFTVAELAAGRVIYQHDGSESPLSDNLVLRLEDGGSRHRVEFLFPITLVPTDDQPPL
LNANTGLAMAEGETVPITTRALSATDIDSQDAILLFTVESGPTAGQLLLRQAQPPPGWEE
EEEEEGFSWRRVPGVAGSSIIYEKPVREWLQQDIVEGRLFYHHFGAHSPGPGVVLDQFIF
RVQDDNDPPNRSGPQTFVIRVHPVDRLAPELHSSSSLHLIVAEQQVTPLRRKHLCYTDQD
SGDRELRYTVIQPPIDTDSNHPPEAYGARLGSLVLTEDHSVEVTHFTQAQINHHKISYRP
PQEELGVAPHLIQFQYQVQDAAGNAAKGTFTIYLQPVDNQPPEITNTGFTLPEGGSHVLS
PTELDASDTDTELAHLRFILTQAPRYGQLQLSGYSLVPGGIFGLEDIRQGRVVYVHSGAE
SSSDTCRLDVSDGVHFVPITLKMNVHPVDDEVPTLRLPPGTLGSYLDVLENGAAEITANV
IQGTDEDTDDLMLTFIVEDPPQHGSILVQGVPAERFSQRDLLDGAVVYAHTGGEIGLLPK
EDAFNLTLSDLSEKWRVRGSVIQGVSVLVTILPVDSQAPEIFVGEQFVVTEGDKRVITLA
HLRAEDVDTPSDDILCTIVAQPTSGYVENISPAPGSEKSRAGVAISAFTLKDLRQGHIFY
VQSIHKGVEPVEDKFALRCSDGINFSQRHFFPIVIVPINDEEPEIFMREFVVMEGMSLVI
DTPILNAVDADVPADDLVFTITKLPRHGHIVNQLVNGTVLVESFTLDQITESSNILYEHD
DSETRADSFEVQLTDGKHTIRKVVPIMVIPVDDETPRMAINDGLEIEIGETRTINNRILK
ATDLDSEDKTLTYIINYGPGQGLLQRIKASGGVENITLGMNFTQDEVDRNLIRYVHFGQQ
GVRDLIKFDVTDGINPLIDRYFYVTIGSIDIVFPDVISKGVSLKEGGKVTLTTDLLSTSD
LNSPDENLVFTITRPPVRGHLECTDQPGVPISTFTQLLLAGNKVYYIHTSEDEVKMDSFE
FEVTDGYNPVFRTFRISISDVDNKKPVVTIHNLVVSENEYKLITPFELSAEDRDTPDALL
KFIITQIPVHGQIMFNNSKPVTTFTKQDLNENLISYKHDGTESVEDSFSFTVTDGTHTDF
YVFPNTVFETRKPQTMKIRIMAVDNSVPQVVINKGAQTLRVLATGHIGFLITNKVLKVED
RDSLHVTLKIRITEGPRHGFLIHLGKGNHSISQFTQADIDDMKICYVLRGGDNATSDIFH
FLVEDGGGNKLKNQHFRLNWAWISLEKEYYLVNEDSKYLDVVLKRRGYLGETSFISISTK
DGTAKKDKDFRGKAQKQVQFNPGQTLATWRVRILTDGEHEHSESFQIVLSEPVMAILEFP
AASTVEIIDPGDESTVFIPQSTYSIEEDVGELFIPVRRSGDVSQELMVICYTQQGTASGT
APTSVLSYSDYISRPEDHNSVLRFDKDEREKMCRIVIIDDSLYEEAETFDVFLSMPMGGK
IGAEFPSTRITIVPDKDDEPAFYFGNDEYYVDESAGYIEVRVWRTGTDLSKAASVTVRSR
KSEPVTAEAGVDYVGISRNLDFSPGVNMQTFRVIILDDLGQPVLEGTEKFELVLRMPMNA
ALGEPSKTTIFINDSVSDLPKMQFKEPVYVANENDGQISAMIFRSGDIRYTSTVRCYTRQ
GSAQVMMDFEERPNTDSSIITFLPGETEKPCTLVLMDDTFHEEEEELRLVLGTPRSDSSF
GASIGEQNETLIKIRDDADKAIIKFGETKFSVSEPKDTRQVAVVKIPVLRLGDTSKVSVV
RVHTKDGSATSGEDYHPISEEIEFKEGETQHFVEIEVLFDGVREMREAFTVHLKPDENMV
AEIEAAKAIVYIEEMNSMADVTFPSVPQVASLLIYDDTSKAKDRTSPIAGYPVICITACN
PKYEDFDKTGSICASENINNTLTQYRWLVSAPTGPDGVTSPMKEVDFDTFFTSSKMITLD
SIYFQAGSRVQCAARAVNSDGNEGLELMSPIVTISTSEGLCQPRISGVVGAEPFSAKLRY
TGPEDPDYANLIKLTVTMPHIDGMLPVISTRELSNFELTLSPDGTRVGNHKCSNLLDYTE
VKTHHGFLTDAAKNLDVIGETVPYQYSPTIRGFNTLRFYRNLNLEACLWEFISYYDMSEL
LTDCGGTIGTDGQVLNLVQSYVTLRVPLYVSYVFHSPVGVGGWQHFDLQSELRLTFVYDT
AILWKDGIGSPPEAELQGSLFPTSMRISEEGRLVVNFKTEARFHGLFVMSHPASSLTSMV
LSADHPGLTFSLSLIRSEPTYNQPVQQWSFVSDFAVRDYSGMYTVKLIACTTAPHQEYSL
PVICNPREPITFDLDIRFQQVSDPVAAEFSLNTQMFLLSKKTLWLSDGSMGFGQESDVAF
SEGDVIYGRVMVDPVQNLGDSFYCSIEKVFLCTGADGYVPKYNPSNTEYGCLADSPSLLY
RFKIVDKAQPETQATSFGNVLFNAKLAIDDPEAIPLVKQPGSDGFKVDSTPLFQVSLGRE
WYVHTIYTVRSKENSNRGIGKRSVEHQYHSLLSAGSPGGSAQRRQKRGVEQAPELARDIG
VENNRGTNIQHIALDRTSRKQVPQREVAVSGVLPRELSNQSAEISIVTIIGGAAAVFLAI
CLIAIIVLLLKWKQNSDKKESTNESGSNEPMMLPHNYSNDSSEV
NT seq
9495 nt
NT seq
+upstream
nt +downstream
nt
atgcagcctctccacgccagaccgcgacggctgctggtcggcttgctgctgctgctggtc
ggctgcgcctgggttggggcggcagagccgccgccaggcagcagcgccgcggtctcctcg
ccgtggtcgccggaggcggcccccgtggtggtggccaaccgcgggctgcgggtgcccctg
ggccgctccgcctggctggaccccgcgcgggacctggtgctgcaggtgcagccgggtgac
cgatgccacctcaccgtgctggacgaggacccgctgtggcagcgcccgggccgcctgagc
ccccggcgcttcccctgtgactttggagcccgcgaagtgcagtactcgcacctgggcggc
cgcagccccgcccgggaccgcgtccgcctgcagctgcgctacgactcgccgagccgtgcc
ctggtgctgcccctggtgctggaggtggaggtgctcttcacccagctggagatcgtcacc
cgcaacctgcccctcaccgtggagcgcctgcggggcaccagcaacccgctggacgctcgc
agcctggagttcgccttcgagccgggccggcagcgctgccgggtggggctgctgccgctg
ctggccgggctgccccgctacggagagatcctcaactacccgccggcggcggcgggcggg
ggcggggaagcggcggggggcggccccatgccttcctcgatgtgggactgcgaggagttc
ctgcgcctggggctgcgctaccggcacacggccgccggcggctccccgaaccgcgacctg
gtgccgctggtggccgagctgcgggaggcggcgggcggcggggcactgctgaagcgcgag
tacttccaggtgctggtgcggatccgcgccgggactgagaacgtggcccccaaacccagc
ttcttggccatgctgatgatggaggtggaccagtttgtgctcaccgctctcacgcctgac
atgctgtcagctgaggatgcagagtcaccgcccgatctgctgctcttcaacatcacctct
ccctttggccctggccaaggccacatggtcagcacagacgaccggagcttgcctgtcacc
tctttcagccagcgggatgtgcgggagctgcgcattgcctatcagccacccatggaggac
tctgatcgggagcggctctttgagcttgaactggaggtgttggacccagaaggtgctgcc
tcagagccctttgccttcgtgattgtggtgaagcccatgaacacccttgcacctgtggtg
acccgcaacactggtcttgtgctctatgaggggcagtcaaggcctctctcgggcccgggt
cccagccccaacctggtggtcagtgatgaggatgaccttgagcaggtgcgggtgagtgtg
gtggcagggctgaagcatggccacctcactctcctggaggacaccccaggatctggtgcc
cctcgtaaacacttcacagtggctgagctggcagccggccgggtcatttaccagcacgat
ggcagcgagtctccactcagtgacaacctggtgctgcggctggaagatggtggctctcgc
caccgcgttgagttccttttccccattaccctggtgcccactgatgaccagccaccccta
cttaatgctaacacagggcttgccatggctgagggtgaaacagtgcccatcaccacccgt
gctcttagtgccactgacattgactcgcaggatgccatcctactcttcacagtggagtct
ggccccacagctgggcagctcctgctccgtcaagcacaaccacctcctggctgggaagag
gaggaagaagaggagggcttttcttggaggagggtgccaggtgtagcagggagctccatc
atctatgaaaagccagtgagagagtggctgcaacaggacattgtggaagggcgtctcttt
taccaccactttggggctcatagccctggccctggggttgtgttggaccagttcatcttt
agagtccaggatgacaatgacccacccaaccgctctggaccacagacttttgtgatcagg
gtacatcctgtagacagattagccccagagctccatagtagcagcagcctgcacttaata
gttgcagagcagcaggtgacccccctgcggaggaagcacttgtgttacacagatcaggac
tcgggagaccgtgaacttcgctacacggtaattcagccccccattgacaccgactccaac
caccctcccgaggcatatggagcgcgccttggatcccttgtgctgactgaggatcactct
gtggaagttacgcatttcacccaagcccagatcaatcatcacaagatctcgtaccgcccc
ccacaggaagagctgggggtggctcctcatttgattcagtttcagtatcaagtgcaagat
gcggctggcaatgcagccaaagggactttcaccatctacctgcagcctgtggataaccag
cctcccgaaatcactaatactggcttcactttgcctgagggaggcagccatgtccttagt
ccaactgagctggatgccagtgacacggacactgaacttgcccatctcagatttatcctg
acccaggctcctcggtatggccagttgcagctttctgggtacagtctggttccaggaggt
atctttggcctagaggatatccggcaagggagggtggtgtatgtgcacagtggagctgag
agcagcagtgatacctgcaggcttgatgtaagtgatggggttcattttgtgcccatcacg
ctgaaaatgaatgtgcacccagttgatgatgaggttcctacactacgattgcccccaggc
actcttggttcctacctagatgtgctggagaatggtgctgctgaaatcactgctaatgtc
attcagggcacagatgaggatacagatgacttaatgttgaccttcattgtagaggatcct
cctcagcatgggagcatcctggttcaaggggtgcctgcagagagattttcccagagagat
ctgcttgatggtgctgtggtatatgctcacactggtggtgaaataggccttctgcccaag
gaggatgccttcaaccttaccttgtctgacctctctgagaagtggcgtgtcaggggcagt
gttatccaaggagtttcagttttggtgaccattcttcctgttgacagtcaagctccagag
atttttgtgggggagcagttcgtggtgacagaaggtgacaaacgagtcattactcttgct
cacctcagggctgaagatgtggatactcctagtgatgatatactttgtacaattgttgct
cagcccacatctgggtatgtagagaacatctctcctgccccaggatctgaaaaatccagg
gcaggtgtagctataagtgcttttaccttgaaggacctccgtcaagggcatattttttat
gtccaaagtatacataagggtgtagagcctgttgaagacaagtttgctttgcgctgttct
gatggcattaacttttcccagaggcacttcttccccattgttattgtgccgatcaatgac
gaagagcctgaaatcttcatgcgagagtttgttgtgatggaaggcatgagcctggttatt
gatacccctatcctcaatgcagttgatgcggatgtccctgctgatgacttagtgttcaca
atcaccaagcttcccaggcatggccacattgtaaaccagctggtcaatggaactgtccta
gtggagagcttcaccttggatcagataacagagagctccaacattctctatgaacatgat
gactctgagacaagggcagacagttttgaggtgcaactcacagatggtaaacacaccatt
aggaaagtggtacccatcatggttattcctgtagatgatgagacacccagaatggccatc
aatgatggtttggagattgaaataggggaaactagaactattaataacaggatattgaag
gctactgatctcgactctgaagacaaaaccttgacatacattataaattacgggccagga
caaggcctcttgcagagaataaaggcttcaggtggagttgaaaatatcaccctgggaatg
aactttacccaagatgaagtggatagaaatttgattcgatatgtgcattttggccaacaa
ggagttcgtgatcttatcaagtttgatgtgacagatggaataaatcctttaattgaccgc
tacttttatgtgacaataggcagcattgatattgtcttcccagatgtcatcagcaaagga
gtttctctgaaggaaggagggaaggtaacccttactactgatttgcttagtaccagtgac
ctgaatagtccagatgagaacttagttttcactattaccagaccacccgttcgtggtcat
cttgaatgcacagatcagcctggggtacccatctccactttcactcaactcctgttagca
ggcaataaagtctattatattcatacttcagaagacgaggtgaaaatggacagctttgag
tttgaggtgactgatggctataaccctgtgtttcgtactttcagaatttccatcagtgat
gtggacaataagaaacctgttgtcacaatccataacctcgtggtgagtgaaaatgaatac
aaactgataaccccatttgaactgagtgcagaagacagagatacacctgatgcactgcta
aaatttatcatcactcaaataccagttcatggccagatcatgttcaataactccaaacca
gtcactaccttcactaaacaagatctgaatgaaaatctaatcagctacaaacatgatggc
acagaatcagttgaggatagtttctctttcactgttacagatggcactcatactgatttc
tatgtcttccccaacactgtgtttgaaacaaggaaacctcagactatgaagattcgaata
atggctgtggacaacagtgtacctcaagtggtaataaataagggtgctcagactctccgt
gttctggccacaggtcacatcgggttcctgattaccaacaaagtcctcaaagtggaagac
agggacagtttacatgttactcttaagatcagaatcacagagggtccacgccatggcttc
ctgattcacctggggaaaggcaaccatagcatcagccagttcacccaagctgatattgat
gatatgaagatatgctatgttttacgagggggtgacaatgccaccagtgacatttttcat
tttttggttgaagacggtggaggcaataagctgaagaatcaacattttcgcctaaactgg
gcatggatctccttagaaaaggagtattacttagtaaatgaagactccaagtatcttgat
gttgttcttaaacggagaggttacctgggagaaacctcttttataagtattagcaccaaa
gatggaactgccaagaaagataaagacttcagaggaaaagcccagaagcaagtgcagttt
aatcctggtcaaaccttagccacatggcgagtacggattttgactgatggtgaacatgaa
cattctgagtcctttcaaattgttctttctgagccagtcatggcaattctggaatttcct
gctgcgtccacagtggaaattattgacccaggagatgaatcaacagtctttattcctcag
tccacctatagtattgaagaagatgttggtgagttatttataccagtcagaagaagtgga
gatgtgagtcaggaactgatggtcatctgctacacacaacaaggaacagcatctggcact
gccccaacctctgtactttcctactctgactacatatccaggccagaggatcacaacagc
gttctacgttttgacaaagacgaacgtgaaaaaatgtgtcggatcgtcatcatagatgat
tccttgtatgaagaggctgagacctttgatgtgtttctgagcatgcccatgggtggaaaa
attggtgcagaattcccaagcactcgcattaccattgtgcctgacaaggatgatgaacca
gcattctactttggaaatgatgaatactatgttgatgagagtgctggctacattgaggtg
cgtgtctggaggactggaaccgatctgtccaaagctgcctctgttacagtgaggtctcgc
aaatctgagccagtaactgcagaggctggagtagattatgtaggcatcagtcgtaatttg
gatttttcccctggagtcaatatgcagacatttcgtgtgataattctggatgatcttgga
cagccagtgttagaaggaactgagaagtttgagcttgtgctaaggatgcccatgaatgct
gcccttggagaacccagcaagaccaccatcttcattaatgactcagtgtctgatttgcca
aagatgcagtttaaagaacctgtgtatgtagccaatgaaaatgatgggcagatttctgcc
atgatattcaggagcggggatatccgatacacatccaccgtgcgatgctatacaaggcaa
ggttcagctcaggtaatgatggacttcgaagaacgtcctaatactgacagttccatcatc
acattccttcctggtgaaactgagaagccttgcacactggtgcttatggatgatactttc
catgaggaggaggaagaactacgcctggttcttggcactccaagaagtgattcttccttt
ggtgcctctattggcgagcaaaacgagacgctgataaagattcgggatgatgcagacaag
gctattattaagtttggtgagaccaaatttagtgtgagtgaaccgaaggacacaaggcaa
gtagcagttgtgaaaatcccagtgcttcgtctgggagacacttccaaagtttctgttgtg
agagttcatacaaaggatggatctgctacttctggagaggactatcaccctatatcagaa
gaaattgagtttaaggagggtgaaacacagcactttgtggagatcgaagttctcttcgat
ggagtaagggagatgagagaagccttcactgttcacctgaagcctgatgagaacatggtt
gcagaaatagaggcagccaaggccatcgtttacatcgaagaaatgaacagcatggcagat
gtcacctttccctctgtccctcaagttgcatctctgttaatatatgatgatacttctaaa
gccaaagacagaaccagtcccattgctggctatcctgtcatctgtatcacagcttgtaat
cctaagtatgaagactttgacaagactggttctatatgtgccagtgagaacatcaataat
actctgacacagtacaggtggcttgtgagtgcccccactggccccgatggtgtgaccagc
cccatgaaggaggttgactttgacaccttcttcacttcctctaagatgattacactcgac
tccatttactttcaagccggttctcgtgtccagtgtgcagctcgtgctgtgaattcagat
gggaatgagggtcttgagcttatgagccctattgtcactataagcacgtcagaaggtctt
tgtcagcctcgtatatcaggagtagttggagcagaaccattctctgccaaactgcgctac
actggcccagaagatcctgactatgccaatctcatcaaactgacagtcacaatgccacat
attgatggcatgctgcctgttatttctacaagagagctctccaactttgagctgacactt
agccctgatggaactagagttggaaaccataaatgctccaacctgttggattacacagaa
gtgaagacccaccatggttttttaactgatgctgccaagaatctagatgtgattggagag
accgttccctaccagtacagcccaacaattagaggcttcaataccttgcgcttctaccgc
aacctgaatctggaagcctgtttgtgggagtttattagctactatgacatgtctgagctc
ctcacagattgtggaggcaccattgggacagatggacaggttctcaacctagtgcagtcc
tatgtcacgctgagagtccctttgtacgtctcttacgttttccactctcctgtgggcgtc
ggaggctggcagcatttcgacctgcagtcagagctccggctgactttcgtgtatgacact
gccatcctgtggaaggatgggatcgggagcccacctgaagcagagctccaaggttccctg
ttcccaaccagcatgcgcatcagcgaagaggggcgcttggttgtcaacttcaagaccgaa
gcccggtttcatggtctgtttgttatgtcccatcctgcttcatctctaacttccatggtt
ctgtcagctgatcacccgggcctcacgttcagcctcagcctcatccgaagtgagccaacc
tacaaccagccagtccagcagtggagctttgtttcagacttcgcggttcgagactattct
ggaatgtacacagtgaagctgatagcctgtaccactgccccacatcaggagtacagcctg
ccagtgatctgcaatcctagagagcccatcacttttgatctggacatccgattccagcag
gtcagtgacccagtggctgctgagttcagcttgaacacccagatgttcctcctctccaaa
aagacactgtggctgtctgatggatcgatgggctttgggcaagaaagtgatgttgctttc
tcagaaggtgatgtcatatatggtcgggtgatggtggatccagtgcagaatttgggtgat
tccttctactgtagcatcgagaaggttttcctgtgcacaggagctgatggatatgtaccc
aaatataatccatccaacactgaatatgggtgccttgctgattctccatcccttctgtac
aggtttaagattgtggacaaagctcagccagagacacaagccacaagctttggaaatgta
ctttttaatgcaaaacttgcaatagatgatcctgaagcaattccattagttaaacagcca
ggctctgatggatttaaagtagactcgactcctctatttcaggtgtctttgggtagggag
tggtacgtccatacaatctacactgtgcgctccaaggagaactctaaccgcggaattggc
aaaagaagcgtggagcaccagtaccactcgctcctcagcgctgggagcccaggaggctct
gcacagagacggcagaagagaggagttgagcaggcaccagaacttgcgagagacattgga
gtagagaacaaccgaggaacgaacatacagcacatagccctggatcgcaccagcaggaaa
caggtgcctcaaagggaggttgcggtcagtggtgttctccccagggaactgagtaaccaa
agtgcggaaatcagcatagtcacaatcataggtggagctgctgctgttttccttgccatc
tgcttaattgcaattatcgttttgctgctaaaatggaaacaaaattctgacaagaaggaa
agcacaaatgagtcaggcagcaacgagccaatgatgctaccacataattacagcaacgac
agctctgaggtttga
DBGET
integrated database retrieval system
