Corvus cornix (hooded crow): 104690028
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Entry
104690028 CDS
T03546
Symbol
IFT88
Name
(RefSeq) intraflagellar transport protein 88 homolog isoform X1
KO
K16474
intraflagellar transport protein 88
Organism
ccw
Corvus cornix (hooded crow)
Brite
KEGG Orthology (KO) [BR:
ccw00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
03037 Cilium and associated proteins [BR:
ccw03037
]
104690028 (IFT88)
Cilium and associated proteins [BR:
ccw03037
]
Primary cilia and associated proteins
Intraflagellar transport (IFT) complex B1
104690028 (IFT88)
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
TPR_2
TPR_1
TPR_12
TPR_7
TPR_19
TPR_14
TPR_8
TPR_16
TPR_6
TPR_11
ANAPC3
TPR_10
ARM_TT21_4th
TPR_17
TPR_9
TPR-S
TPR_CcmH_CycH
TPR_15
ARM_TT21_5th
ARM_TT21_C
DUF2989
HEAT_Nup120
TPR_21
HAT_PRP39_C
DUF6584
ARM_TT21_2nd
NatA_aux_su
DUF4919
Motif
Other DBs
NCBI-GeneID:
104690028
NCBI-ProteinID:
XP_010398832
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All DBs
Position
1:44747725..44794740
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AA seq
816 aa
AA seq
DB search
MMQNVHLAPENNEDDLYSGYNDYNPMFDTKDLENDVAFQQAARTSHGRRPPVTAKIPGTS
SPRPLATGFGSKATLPSSMGRPMTGNIQDGVSRPMTAVQAAGYTKAAVRGSSFDPLGQAR
GPASPLEKKTSDSSEEKMRQLEKKVNELVEESCVANSCGDLKSALEKAKEAGRQERELLR
QREQIAPPESINLDLTYTVLLNLASQYVANEMYAEALTTYQVIVKNKMFSSGGILKVNMG
NIYLKQRNYSKAIKFYRMALDQITSSHKQMRIKIMENIGVAFIKTGQYFDAISSFEEIMS
ISPNLKAGFNLILCYFAIGNGEQMKKAFKNLIEVPLEVDYEDKYILLNDDLHTNLLIEAI
KNDSLSQIIRERKLLAEEYIMTAAKLIAPAIETSFAVGYDWCVDVVKASHYVELANDLEI
NKATTYLRQHNFNQALETLKMFEKKDSRVKSAAATNLSFLYYLGNELEQATNYADLAVNS
DRYNPAALTNKGNTVFANGDCEKAAEFYKEALRNDSLCTEALYNLGLAYKKLNRIDEALD
CFLKLHAILPNSAQVLYQLASIYQIMEDPNQAIEWLLQLISVVPTDPHVLSKLGNLYDTE
GDKSQAFHYYCESYRYFPSNIEVIEWLGAYYIDTQFCEKAIEYFERAALILPTQVKWQLM
VASCYRRSGNYQKALEKYKVIHRKFPENVECLRFLVRLCTDMGLKEVQEYITKLKKAEKL
KEIREQRIKSGRDGSARGRKEGSGDSGGTKGERLSAKLKALPATSEPYESSNSKEIDASY
ADPLGPQPERPKTAARKRTEEDDFADEELGEDLLPE
NT seq
2451 nt
NT seq
+upstream
nt +downstream
nt
atgatgcaaaatgtgcatctggctcctgagaataatgaagatgatctctattctggctac
aatgattataatcccatgtttgacacaaaggatttagaaaatgatgtagcttttcaacag
gcagcaagaacaagtcatggaagaagaccccctgtgacagccaaaattcctggcacatca
agtccaagacctctagcaactggatttgggtcaaaggcaactttaccttcatctatggga
agacccatgacaggaaatatacaggatggggtttctcgaccaatgacagcagtgcaagct
gcaggttacactaaggcagctgtgagaggttcttcatttgatcctcttggccaagcgaga
ggtcctgcttcacctctggagaagaaaacttcagacagttcagaagagaagatgaggcag
ttggaaaaaaaagtgaatgaactggttgaagaaagctgtgttgccaatagctgtggagac
ttgaaatcggctctggagaaagcaaaggaggctggaagacaggaaagagaattgttgaga
caacgtgaacaaattgctcctccagaaagtatcaacttagaccttacttacacagttctt
ctcaatctggccagtcagtatgttgctaatgaaatgtatgctgaagcgctgactacttac
caagttatagtgaagaacaagatgttcagcagtggaggtatactgaaggtaaatatggga
aatatatatttaaaacaacggaactattccaaagctatcaaattctaccgtatggctcta
gaccaaattactagttcccacaaacagatgaggataaaaatcatggaaaatattggagtt
gcatttattaaaactggccaatactttgatgccatttcttcatttgaagaaataatgagc
atatctccaaacctgaaggcaggcttcaacctgatcctatgttattttgctattggaaat
ggtgagcaaatgaagaaagccttcaaaaacctgatcgaagttcccttggaagtggattat
gaagacaaatacattttattaaatgatgatctacatacgaatctactgattgaagccatt
aaaaatgacagtttaagtcaaataatacgtgagaggaaattgttggcagaggaatacatc
atgacagctgctaaactcattgcaccggcaatcgagacatcttttgcagtaggctatgac
tggtgtgttgacgtggtgaaagcttcccactatgtggagttagccaatgatctagaaatt
aataaagccactacttacttgaggcaacataattttaaccaggcgctggagactttgaaa
atgtttgaaaaaaaagatagcagagtaaagagtgcagctgcaacaaacctttcattcctt
tattatttggggaatgaattggaacaagcaactaactatgcagatttagctgtaaattct
gataggtacaatccagcagctctaactaacaaaggaaatactgtttttgcaaatggagac
tgtgaaaaagcagctgaattttataaggaagctctcaggaatgattccttatgcactgaa
gcgctttataatcttggtttagcatacaagaagttaaacaggatagatgaagctttggat
tgttttctgaaactccatgcaatccttccaaatagtgcccaagtgctttaccagctagca
agcatataccagatcatggaagatcccaatcaagccatagagtggctcctgcagttgatt
agtgtagtaccaactgatccacatgtactttcaaagctagggaatttatatgatactgaa
ggtgataaatctcaagcttttcattattactgtgagtcataccggtatttcccttcaaac
attgaggtcattgaatggcttggagcgtattacattgacacccagttctgtgaaaaagcc
attgagtactttgaaagagcagcacttatcctgccaacacaagtgaagtggcagctgatg
gttgccagttgctacaggagaagcggtaactaccagaaagctctggagaaatacaaagtc
attcacagaaaattcccagagaatgttgaatgcctccgatttttagttcgtctctgcaca
gacatggggctgaaagaagtccaggaatatataacaaagcttaagaaagcagaaaaatta
aaagaaataagagagcagcgcattaaatctggcagagatggcagtgcacgtggccgcaaa
gaaggaagtggtgatagtggtggtaccaaaggggaaagactgagtgccaaactaaaagct
ctgcctgcaacaagtgaaccctatgaaagtagcaacagtaaagaaatagatgcctcctat
gcagatccacttggcccacaaccagaaagaccaaaaacagcagcaagaaaaagaacagag
gaggatgactttgctgatgaagaactaggagaggatctgcttccagaatag
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